Pairwise Alignments

Query, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 342 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  120 bits (301), Expect = 5e-32
 Identities = 88/327 (26%), Positives = 142/327 (43%), Gaps = 2/327 (0%)

Query: 7   LIAASILAVTSFNAAANCDPGEIVIKFSHVTNTDKHPKGIAASLLEKRVNEEMNGKACMQ 66
           LIAA+  A       A  +  +  ++ S +T +  HP GIA +   + +  +  GK  M+
Sbjct: 13  LIAAAAAAAVFTTGLAQAEFQDRTVRIS-MTGSKDHPAGIALTKTSECLAAKSGGKFKMR 71

Query: 67  VFPNSTLYDDDKVLEALLNGDVQLAAPSLSKFEKFTKKYRIFDLPFLFEDVDAVDRFQSS 126
            F  + L  +   L  + +G +  A  + +       +  +FDLPFL  D   +D     
Sbjct: 72  PFFEAVLGPEQANLTQVRSGSLDGAVITTAATAPAVPQLGVFDLPFLVSDYKEIDALLDG 131

Query: 127 AKGEELKNAMTRRGVKGLEFWHNGMKQIS-ANKPILVPADAKGLKFRVQASDVLVAQFEQ 185
           A GE L       G+  L FW +G + ++ + +PI    D +GLK RV  +   +  F Q
Sbjct: 132 AFGERLAGFYGAAGLVHLSFWEHGFRNVTNSRRPINKLEDLQGLKLRVIQNKTFIDTFTQ 191

Query: 186 IGANPQKMSFAETYGGLQTKVIDGQENTWSNIYGQKYFEVQDGTTETNHGILDYLVVTSS 245
           +GANP  M F E Y  L+TK IDGQEN  + +   K +EVQ     T H       + S 
Sbjct: 192 LGANPVPMPFTEVYSALETKAIDGQENPVAFLQTSKLYEVQKHVALTRHVYSPVNFIYSK 251

Query: 246 KWWDGLPADVRDQFAKILNEVTIERNAESNKVEELNKQYIIEAGGVVRTLTPEQRQQWVD 305
             +D L  D +        E  +        +E+ +  Y+   G  +   +  + ++  +
Sbjct: 252 TQYDKLAPDEQKALKDCAMENRLVNRQLGRDMEDKSAAYLKTQGVAITEPSKAELERMRE 311

Query: 306 ALKPVWQKFEKDIGADLIEAALAANQK 332
             K V+      +G DLI A  A  +K
Sbjct: 312 KTKVVYANQTAVLGPDLINALNAEVKK 338