Pairwise Alignments

Query, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  117 bits (294), Expect = 3e-31
 Identities = 91/323 (28%), Positives = 144/323 (44%), Gaps = 13/323 (4%)

Query: 5   LTLIAASILAVTSFNAAANCDPGEIVIKFSHVTNTDKHPKGIAASLLEKRVNEEMNGKAC 64
           L  + A++LA+     AA+    E+ I ++   N+     G  A+       +  NG+  
Sbjct: 10  LLAVGAAVLAI---GTAAHAQTREVKIGYALAPNSHY---GAGANAWAASFEKATNGQFK 63

Query: 65  MQVFPNSTLYDDDKVLEALLNGDVQLAAPSLSKFEKFTKKYRIFDLPFLFEDVDAVDRFQ 124
            + FP+S L  + ++LE L  G V+ A  S      F  +  + D+PFLF D++      
Sbjct: 64  FRQFPSSALGGERELLEGLQLGTVEAAIVSSGTLSNFVPEVGVTDIPFLFRDINHARSVL 123

Query: 125 SSAKGEELKNAMTRRGVKGLEFWHNGMKQISANK-PILVPADAKGLKFRVQASDVLVAQF 183
               G++L      R +  L +   G + I+  K PI  P D KGLK R   + V +  F
Sbjct: 124 DGPIGQDLLGKFKSRNLVALAWGEQGFRHITNGKHPITKPEDLKGLKIRTMENPVHITAF 183

Query: 184 EQIGANPQKMSFAETYGGLQTKVIDGQENTWSNIYGQKYFEVQDGTTETNHGILDYLVVT 243
             +GA P  M++ E  G LQ   IDGQEN  S I   K   VQ     T H     +++ 
Sbjct: 184 RTLGAAPTPMAWPEVTGALQQGTIDGQENPISVIASAKLSAVQKHLALTGHVYSPAMLLV 243

Query: 244 SSKWWDGLPADVRDQFAKILNEVTIERNAESNKVEELNKQYI--IEAGGVVRTLTPEQRQ 301
           S K+WD L      Q A +         A    V+++ K+ +  + A G+  T  P  + 
Sbjct: 244 SPKFWDSLN---DSQKAAVTAGAKEGAKAMRQFVDDIEKKGVDELRAQGMQITEVP-NKA 299

Query: 302 QWVDALKPVWQKFEKDIGADLIE 324
            +  AL P +Q++    G +LI+
Sbjct: 300 PFQQALSPAYQQYASKYGKELID 322