Pairwise Alignments

Query, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 337 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  111 bits (278), Expect = 2e-29
 Identities = 94/326 (28%), Positives = 152/326 (46%), Gaps = 11/326 (3%)

Query: 9   AASILAVTSFNAAANCDPGEIVIKFSHVTNT-DKHPKGIAASLLEKRVNEEMNGKACMQV 67
           AAS+LA  +  A A     + V+K++H     +  PK  AA   +  V +  NG   +++
Sbjct: 14  AASLLAFGAGPAFA-----QKVLKYTHYQPAGNDQPKHAAALAFKDHVEKATNGSLKVEL 68

Query: 68  FPNSTLYDDDKVLEALLNGDVQLAAPSLSKFEKFTKKYRIFDLPFLFEDVDAVDRFQSSA 127
           +P   L    +V+E L  G V+LA           K + IF LPFLF D           
Sbjct: 69  YPAGQLGPAQQVMEGLRLGTVELAVVHDGGIPGVYKTFNIFGLPFLFNDHAHAYAVLDGK 128

Query: 128 KGEELKNAMTRR-GVKGLEFWHNGMKQISANK-PILVPADAKGLKFRVQASDVLVAQFEQ 185
            G+EL   M +R G++ + +  NG++  + NK  I  P D KGLK RVQ S V V   E 
Sbjct: 129 FGQELAEDMRKRTGIRLMGYADNGIRHFTNNKRAIKTPEDMKGLKIRVQPSPVFVKLVES 188

Query: 186 IGANPQKMSFAETYGGLQTKVIDGQENTWSNIYGQKYFEVQDGTTETNHGILDYLVVTSS 245
           +GA+P  + + E    L     DGQEN  +NI     F+ Q   T   H    +  + S 
Sbjct: 189 LGASPTAIDWGELPAALAQGTADGQENGVTNIMAASLFQHQKHITLDGHVYSLHAYMVSE 248

Query: 246 KWWDGLPADVRDQFAKILNEVTIERNAESNKVEELN-KQYIIEAGGVVRTLTPEQRQQWV 304
           ++++GL A  +    + + ++  + + +  + ++L+ K+ + E G  V  LTP +  ++ 
Sbjct: 249 RFFNGLNATEKKAVTEGV-DIAKKIHRDMTRAQDLSAKKVLTEKGMTVTELTPAEIDRFR 307

Query: 305 D-ALKPVWQKFEKDIGADLIEAALAA 329
             A  PV    E ++  +  E  L A
Sbjct: 308 KVAQPPVRAYLEAEVSKEWTEKLLQA 333