Pairwise Alignments

Query, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., ABC transporter substrate binding protein from Agrobacterium fabrum C58

 Score = 93.6 bits (231), Expect = 6e-24
 Identities = 85/293 (29%), Positives = 133/293 (45%), Gaps = 29/293 (9%)

Query: 6   TLIAASILAVTSFNAAANCDPGEIVIKFSHVTNTDK--HPKGIAASLLEKRVNEEMNGKA 63
           TL+ A+   + S  AA      E  +K++HV  T +  H   + A+   + + +  +G+ 
Sbjct: 7   TLMGATAAILLSALAAQ----AETTLKWAHVYETSEPFHTDSVWAA---EEIAKRTDGRY 59

Query: 64  CMQVFPNSTLYDDDKVLEALLNGDVQLAAPSLSKFEKFTKKYRIFDLPFLFEDVDAV--- 120
            + VFP S L  +  + + L  G V +     S   +  K   +   P++F D   +   
Sbjct: 60  KVDVFPASQLGKEADINQGLKIGTVDIIISGSSFAARDFKPIGVTYFPYIFRDPSHLIAY 119

Query: 121 ---DRFQSSAKGEELKNAMTRRGVKGLEFWHNGMKQISANKPILVPADAKGLKFRVQASD 177
              D F+  AKG E K   T   +  + ++  G +  ++NKPI   AD  GLK RV    
Sbjct: 120 TKSDIFKRLAKGYEDK---TGNHIAAVSYY--GTRHTTSNKPIAACADMAGLKMRVPDVP 174

Query: 178 VLVAQFEQIGANPQKMSFAETYGGLQTKVIDGQENTWSNIYGQKYFEVQDGTTETNHGIL 237
             +A     GAN   ++FAE Y  LQ   +D QEN  + I  +K+FEVQ     T H I+
Sbjct: 175 AYLAMPRACGANTTPIAFAEVYLALQNGTVDAQENPLTTIEAKKFFEVQKNIVLTGH-IV 233

Query: 238 DYL-VVTSSKWWDGLPADVRDQFAKILNEV------TIERNAESNKVEELNKQ 283
           D+L  V S   W  L  + +  F  ++ E       TIE   E + VE+  K+
Sbjct: 234 DHLNTVVSKNLWSKLSDEDKKIFTDVMQEAAERTTKTIE-GREKSLVEDFKKR 285