Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., C4-dicarboxylate TRAP transporter large permease protein DctM from Xanthobacter sp. DMC5

 Score =  233 bits (595), Expect = 7e-66
 Identities = 160/474 (33%), Positives = 251/474 (52%), Gaps = 54/474 (11%)

Query: 1   MAVALLFIL----VIGMMIVGVPIAISLGLSSILFLL-WHSDASLASVAQTLFNAFAGHY 55
           M+ AL+ +L     +G M +G+PIA +LG  ++LF++ +   ASL +V Q ++   A   
Sbjct: 1   MSTALVGLLYGGATLGTMFLGMPIAFALGAVAVLFMVGFMPAASLDTVTQNVYEEMAS-I 59

Query: 56  TLLAIPFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPAT 115
           TLL+IP FIL    +      + +     A +    GGL IA+V AC +FAA++GSSPAT
Sbjct: 60  TLLSIPLFILKGAAIGKSRAGQDLYSALHAWMHKIPGGLGIANVFACALFAAMAGSSPAT 119

Query: 116 VVAIGSIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGG 175
             AIGS  I  M K GYS  FAAG+I   GTLGIL+PPSI M++Y+ A   S+GR+FL G
Sbjct: 120 CSAIGSAGIPEMRKRGYSGAFAAGLIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAG 179

Query: 176 VVPGLLAGLMLIIAIYITARIKNLPKQPFVGWKEA-----------------LKAAKEAS 218
           + PGLL  L+++ A Y   R     +Q +   K+A                 L+    A 
Sbjct: 180 LGPGLL--LVMLFAGYAMVRF----RQEYAAAKKAYAETGARSALLHEENLTLRDRFAAL 233

Query: 219 WGLLLVVIILGGI----YGGIFTPTEAAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLV 274
             +L  V++L G+    YGG  TP+E A +  V +  +   IY    P            
Sbjct: 234 PRVLPFVVLLTGVMVALYGGYATPSETAGLGGVLALALIALIYGVWTP------------ 281

Query: 275 KVVETFVHKDTKATLYDAGKLTIMLMFIIANALILKHVLTEERIPQMITESMLSAGLGPI 334
                   KD    L    + + MLM II  +L+  +V++   I Q   +++++  L   
Sbjct: 282 --------KDLSPILTSTIRESTMLMMIIGMSLLYSYVMSYLHISQAAAQAIVALNLSKW 333

Query: 335 TFLIVVNLILLVGGQFMEPSGLLVIVAPLVFPIAIALGIDPIHLGIMMVVNMEIGMITPP 394
             L  + ++++V G F+ P  ++++ AP++ P   A G D I  G++M + ME+G+I PP
Sbjct: 334 LLLATILVLVVVLGFFLPPVSIILMTAPIILPPLKAAGFDLIWFGVVMTIVMEMGLIHPP 393

Query: 395 VGLNLFVTSGVA-KMSMMNVVKAALPWVGVMFLFLIIVTYVPWVSTWLPTLLMG 447
           VGLN+FV   +A  + + +V+   +P+V +M L +I++   P ++T  P L+MG
Sbjct: 394 VGLNIFVIKNIAPDIPLKDVIWGTVPFVLLMLLAVILLCLFPQIATGFPDLVMG 447