Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

 Score =  261 bits (666), Expect = 4e-74
 Identities = 163/457 (35%), Positives = 252/457 (55%), Gaps = 47/457 (10%)

Query: 5   LLFILVIGMMIVGVPIAISLGLSSILFL-LWHSDAS---LASVAQTLFNAFAGHYTLLAI 60
           LLF+  + MM+VGVPI  +LGL+    + L +SDA    L +V Q  F A  G Y LLAI
Sbjct: 5   LLFLAFVVMMLVGVPIGAALGLAGAACIALANSDAQWFGLLAVPQN-FYAGLGKYPLLAI 63

Query: 61  PFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIG 120
           P F+L  +     GVA R++ FAIA+VG   G L + ++   M    +SGS PA   A+G
Sbjct: 64  PMFVLVGSIFDRSGVALRLVNFAIAIVGRGPGMLPLVAIAVAMFLGGISGSGPANAAAVG 123

Query: 121 SIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSA-ATNVSVGRMFLGGVVPG 179
           +++IA M + GY   F+A V+  A    ILIPPS+  +VYS      SV  +F  G+VPG
Sbjct: 124 AVMIAAMSRAGYPAAFSASVVGAAAATDILIPPSVAFIVYSVLVPGASVPALFAAGMVPG 183

Query: 180 LLAGLMLIIAIYITAR-------IKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIY 232
           +LAGL L+I   + AR          LP+ PF  W    K+ +EA+WGL   V+ILGG+ 
Sbjct: 184 VLAGLALMIPAVLLARKHKMGALEATLPRPPF--W----KSFREATWGLAAPVLILGGMR 237

Query: 233 GGIFTPTEAAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDA 292
            G FTPTEAA VA  Y  F+  F++R               +KV + FV       L ++
Sbjct: 238 AGWFTPTEAAVVAVFYGLFVGMFVHR--------------TIKVRDLFV------ILRES 277

Query: 293 GKLTIMLMFIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLVGGQFME 352
           G+L+ +++ +++ A I  + L+   +   +T +++++GLG    L ++ L+L+  G F++
Sbjct: 278 GELSAVILLVVSLAGIFAYSLSTLGVIDPVTRAIVNSGLGEYGILALLILLLITVGMFLD 337

Query: 353 PSGLLVIVAPLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVAKMSMMN 412
              + +I  PL+ PI      DP+  G+++ + + +G  TPP+ +NL V+  +AK+ M  
Sbjct: 338 GVSIFLIFVPLLLPIVQYYKWDPVWFGVILTLKVALGQFTPPLAVNLMVSCRIAKVRMEE 397

Query: 413 VVKAALPWVG----VMFLFLIIVTYVPWVSTWLPTLL 445
            V+    WVG     MF+ +++V   P ++ WLP  L
Sbjct: 398 TVR----WVGWMLFSMFVVMVLVIIFPELALWLPRKL 430