Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

 Score =  238 bits (606), Expect = 4e-67
 Identities = 145/472 (30%), Positives = 247/472 (52%), Gaps = 43/472 (9%)

Query: 1   MAVALLFILVIGMMIVGVPIAISLGLSSILFLLWHSDASLASVAQTLFNAFAGHYTLLAI 60
           MA+ +L +  +  +++G+P+A ++GLS +    +       +  Q + +     ++ LAI
Sbjct: 1   MALTVLSLSFVLFLLLGMPVAFAIGLSCLATFAYEG-LPFETAIQMMVSGM-NVFSFLAI 58

Query: 61  PFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIG 120
           PFFI +   M  GG+A +I+ FA ++VG ++GGL +A+VVA  +F  +SGS  A   A+G
Sbjct: 59  PFFIFSGELMLHGGIADKIVAFARSLVGHWKGGLGLANVVASTLFGGVSGSPVADTSAMG 118

Query: 121 SIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATN-------------VS 167
            ++I  M + GYS  +A  V  +A   G L+P S  M++Y+ A               VS
Sbjct: 119 GVMIPIMKREGYSAAYAVNVTTHASLSGALMPTSHNMIIYAFAAQAAVGTIDGHIIKGVS 178

Query: 168 VGRMFLGGVVPGLLAGLMLIIAIYITARIKNLPKQP--------FVGWKEALKAAKEASW 219
           +G +   G++P     + +++A Y  A     PK+         F GW    K    A  
Sbjct: 179 IGDLMFAGLIPVFWIMVCMLVAAYWQAAKHGYPKRTDGSTMLERFPGWGMVGKTFLAAIP 238

Query: 220 GLLLVVIILGGIYGGIFTPTEAAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVET 279
           GL+++VIIL  +  G+ T TEAAA+A  YS  +    YR M        T+  L K    
Sbjct: 239 GLMVIVIILVCVMQGVATATEAAAIAVTYSLLLTVVAYRTM--------TREKLFK---- 286

Query: 280 FVHKDTKATLYDAGKLTIMLMFIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIV 339
                   +L  A K T +++ +I  + +L++ +    IP  I   +L+A   P   L+ 
Sbjct: 287 --------SLAKASKTTGVILLLIGVSNMLRYQMAYLEIPDAIETVLLAATTSPWLMLLY 338

Query: 340 VNLILLVGGQFMEPSGLLVIVAPLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNL 399
           +N+I +  G F++ +  ++I  PL  P+AI +G+ P+  G+M+++N  +G++ PPVG   
Sbjct: 339 INIIQIFLGIFLDMAAHILITTPLFLPLAIQMGVGPVQFGMMLLLNCALGLVHPPVGTVQ 398

Query: 400 FVTSGVAKMSMMNVVKAALPWVGVMFLFLIIVTYVPWVSTWLPTLLMGPEII 451
           F+   + K+S+    K A P+   +F+ + +VTYVP  STWLPT+L G +++
Sbjct: 399 FIGCAIGKISIGEATKTAWPYYLAIFIAITLVTYVPAFSTWLPTMLTGHKVL 450