Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3 from Variovorax sp. SCN45

 Score =  256 bits (653), Expect = 1e-72
 Identities = 148/449 (32%), Positives = 242/449 (53%), Gaps = 30/449 (6%)

Query: 2   AVALL-FILVIGMMIVGVPIAISLGLSSIL---FLLWHSDASLASVAQTLFNAFAGHYTL 57
           AVA+L F+ +  +M++ VP+ +++GL  +    +L+    A L  V QT        YT 
Sbjct: 5   AVAVLGFVALFVLMLLRVPVGMAMGLVGVTGYSYLVGPGPA-LKLVGQTSMRTVTD-YTF 62

Query: 58  LAIPFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVV 117
             IP F+L    +S  GV++ + + A +M+G  RGGL +A+VVAC  FAA+ GSS AT  
Sbjct: 63  GVIPMFMLMGALVSVSGVSRELFKAANSMIGHLRGGLGVATVVACGGFAAICGSSVATAA 122

Query: 118 AIGSIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVV 177
              ++    M +  Y + F+ GVI   GTLG ++PPS V+ VY+  T   +G++F+ G+V
Sbjct: 123 TFSAVAYPEMRRFNYPQSFSTGVIAAGGTLGAILPPSTVLAVYAILTQQDIGKLFMAGIV 182

Query: 178 PGLLAGLMLIIAIYITARIKN--LPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGI 235
           PG+LA  M ++ I I  +++   LP      W E +K  K     L+L V ++GG+YGG 
Sbjct: 183 PGILAMAMYVMTIAIIVKLRPDWLPGGEIKPWSERVKDLKNVWAPLVLFVFVIGGLYGGF 242

Query: 236 FTPTEAAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDAGKL 295
           FTPTEA  V A  +F +     +  GP                       +  L  A + 
Sbjct: 243 FTPTEAGGVGASGAFILGLVRRKLDGP---------------------KIREALLSATRT 281

Query: 296 TIMLMFIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLVGGQFMEPSG 355
              +  ++  AL+  + LT  + PQ +TE +   G+G    L ++ L+ LV G  M+   
Sbjct: 282 AAAVFTVLIGALLFGYFLTITQSPQKLTEFLTGLGIGRYGVLALIMLMYLVLGCLMDAMA 341

Query: 356 LLVIVAPLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVAK-MSMMNVV 414
           ++++  P+++P+ + LG DPI  G+++V+ +E+G+I PPVG+N+FV   V K +S   + 
Sbjct: 342 MIILTVPIIYPVIVHLGFDPIWFGVIIVMTVELGLIHPPVGMNVFVIKSVVKDVSFTTIF 401

Query: 415 KAALPWVGVMFLFLIIVTYVPWVSTWLPT 443
           K  LP++    + L+I+   P ++ WLPT
Sbjct: 402 KGVLPFIVTDIVRLVILIAFPIIALWLPT 430