Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 437 a.a., TRAP transporter large permease subunit from Variovorax sp. OAS795

 Score =  182 bits (463), Expect = 1e-50
 Identities = 133/456 (29%), Positives = 222/456 (48%), Gaps = 38/456 (8%)

Query: 4   ALLFILVIGMMIVGVPIAISLGLSSILFLLWHSDASLASV--AQTLFNAF---AGHYTLL 58
           ALL  +++ ++  GV IA++L +       W   A   +    + LF+AF      + L 
Sbjct: 9   ALLLAIMMLLLAGGVWIAMTLAIVG-----WVGQAFFTNTLPGKNLFSAFWESNASWELA 63

Query: 59  AIPFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVA 118
           A+P FI     +    +++ +       +    G L   +++ C +F ++SGSS AT   
Sbjct: 64  ALPLFIWMGEILFRTKLSEEMFEGLRPWLNRVPGRLMHTTILGCGVFGSVSGSSAATCAT 123

Query: 119 IGSIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVVP 178
           I  + +  + + GY+++ A G +  AGTLGILIPPSI MVVY+ A + S+ R+FL G +P
Sbjct: 124 IAKVALPELKRRGYNEQLAIGSLATAGTLGILIPPSITMVVYAVAADASIIRIFLAGFLP 183

Query: 179 GLLAGLMLIIAIYITARIKNLPKQ-----PFVGWKEALKAAKEASWGLLLVVIILGGIYG 233
           G L  LML+ + YI       P Q     P   + E ++ +       LL++ I+  +  
Sbjct: 184 GFL--LMLLFSGYIGWWSLRNPDQVPPADPPTTFMEKIRLSGNLIPCALLIIFIVWVLVA 241

Query: 234 GIFTPTEAAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDAG 293
           G  T TE AA   + S  IA +                      ++   K+ K  +  A 
Sbjct: 242 GWATATECAAFGVLGSLAIAAW---------------------GKSLTWKNFKEGIMGAT 280

Query: 294 KLTIMLMFIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLVGGQFMEP 353
           + + M+MFI+A A  L   +    IP+ + E + S  L P   +  + L+ LV G  ++ 
Sbjct: 281 RTSCMIMFILAGAAFLTKTMAFTGIPRELAEWVDSMHLSPYALIGALVLVYLVLGTALDG 340

Query: 354 SGLLVIVAPLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVAKMSMMNV 413
             ++V+ + +V P+    G D I  GI +V+ +EI  +TPPVG NLFV   +       +
Sbjct: 341 ISMIVLTSAVVLPMIQKAGFDLIWFGIFIVLLVEIAEVTPPVGFNLFVLQNMTGKDSNVI 400

Query: 414 VKAALPWVGVMFLFLIIVTYVPWVSTWLPTLLMGPE 449
            KAA+P+   + L ++++T  P + T LP ++MG E
Sbjct: 401 AKAAIPFFFCLVLCIVLITLFPSIVTILPNVVMGVE 436