Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) from Pseudomonas putida KT2440

 Score =  309 bits (791), Expect = 1e-88
 Identities = 165/445 (37%), Positives = 270/445 (60%), Gaps = 27/445 (6%)

Query: 7   FILV---IGMMIVGVPIAISLGLSSILFLLWHSDASLASVAQTLFNAFAGHYTLLAIPFF 63
           FIL+   I ++++G+P+A +LGLS+++   W      A + Q         ++LLAIPFF
Sbjct: 4   FILLGSFIVLILIGMPVAYALGLSALIGAWWIDIPLQAMMIQVASGV--NKFSLLAIPFF 61

Query: 64  ILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIGSIV 123
           +LA   M+ GG+++R++ FA  +VG+ RGGL++ +++A   F A+SGSS A   ++GS++
Sbjct: 62  VLAGAIMAEGGMSRRLVAFAGVLVGFVRGGLSLVNIMASTFFGAISGSSVADTASVGSVL 121

Query: 124 IAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATN--VSVGRMFLGGVVPGLL 181
           I  M + GY +EF+  V  +     +L PPS   V+YS A    VS+  +F+ G++PGLL
Sbjct: 122 IPEMERKGYPREFSTAVTVSGSVQALLTPPSHNSVLYSLAAGGTVSIASLFMAGIMPGLL 181

Query: 182 AGLMLIIAIYITARIKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIFTPTEA 241
              +++    I A+ +N PK   +  +EALK A EA WGL+ +VIILGGI  G+FT TE+
Sbjct: 182 LSAVMMGLCLIFAKKRNYPKGEVIPLREALKIAGEALWGLMAMVIILGGILSGVFTATES 241

Query: 242 AAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDAGKLTIMLMF 301
           AAVA V+SFF+  FIYRD                    +  +D    ++   +   ++M 
Sbjct: 242 AAVAVVWSFFVTMFIYRD--------------------YKWRDLPKLMHRTVRTISIVMI 281

Query: 302 IIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLVGGQFMEPSGLLVIVA 361
           +I  A    +V+T  +IP  IT + L+        L+ +N +L++ G  M+ + L++I+ 
Sbjct: 282 LIGFAASFGYVMTLMQIPSKITTAFLTLSDNRYVILMCINFMLMLLGTVMDMAPLILILT 341

Query: 362 PLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVAKMSMMNVVKAALPWV 421
           P++ P+   +G+DP+H G++M+VN+ IG+ITPPVG  LFV S + K+S+ + VKA +P+ 
Sbjct: 342 PILLPVITGIGVDPVHFGMIMLVNLGIGLITPPVGAVLFVGSAIGKVSIESTVKALMPFY 401

Query: 422 GVMFLFLIIVTYVPWVSTWLPTLLM 446
             +FL L+ VTY+P +S WLP++++
Sbjct: 402 LALFLVLMAVTYIPAISLWLPSVVL 426