Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 430 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  259 bits (663), Expect = 9e-74
 Identities = 147/449 (32%), Positives = 252/449 (56%), Gaps = 27/449 (6%)

Query: 1   MAVALLFILVIGMMIVGVPIAISLGLSSILFLLWHSDASLASVAQTLFNAFAGHYTLLAI 60
           M +A+L +  + ++++GVP+A S+GL+S+  +L+ +   +  V Q +       ++ +AI
Sbjct: 1   MELAVLSVTFLVLLLIGVPVAFSIGLASVATVLY-AGVPVPIVFQKMVGGMQV-FSFMAI 58

Query: 61  PFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIG 120
           PFF+ A   M  GG+A RI+RFA ++VG  RGGL +++VV C +F  ++GS+ A V A+G
Sbjct: 59  PFFVFAGELMLYGGIADRIVRFANSLVGHVRGGLGMSNVVGCTLFGGVAGSALADVSAMG 118

Query: 121 SIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAAT----NVSVGRMFLGGV 176
           S++I  M K GY  ++A  V  +A  +G+L+P S  +++++ AT    +VSV  + L  +
Sbjct: 119 SVMIPLMKKEGYDADYAVNVTTHAALVGVLMPTSHNLIIFTLATTGIASVSVLNLILAAI 178

Query: 177 VPGLLAGLMLIIAIYITARIKNLPKQ-PFVGWKEALKAAKEASWGLLLVVIILGGIYGGI 235
           VP +L  +  + A Y  A  +  P +  F GW E L A   A  GLL+VVIIL GI  G+
Sbjct: 179 VPAVLLTVCNLAAAYYVAVKRGYPTRGKFPGWGEVLSAWLGALPGLLIVVIILVGILSGV 238

Query: 236 FTPTEAAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDAGKL 295
           FT  E+AA A +++  +   +YR +                      KD       A K 
Sbjct: 239 FTAAESAATAVLWALVVTVLVYRSLS--------------------WKDFLKACAKASKT 278

Query: 296 TIMLMFIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLVGGQFMEPSG 355
           T +++ +I  +    + +    +PQ   E M S    P    +++N++L + G F++ + 
Sbjct: 279 TGVVLLLIGISSAFGYFMALYEVPQKTGELMTSVSDNPWVIFLMINILLFILGTFLDMAA 338

Query: 356 LLVIVAPLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVAKMSMMNVVK 415
            +++  P+  PIA+  G+DP   GI+M++N  +G+ TPPVG+  FV   +  +S+  V++
Sbjct: 339 TILVCTPIFLPIAMHFGMDPAQFGIVMLINCALGLNTPPVGVTQFVGCAIGGISVGQVMR 398

Query: 416 AALPWVGVMFLFLIIVTYVPWVSTWLPTL 444
           + LP+ G + + L++VTYVP  S WLP++
Sbjct: 399 SILPFYGALTVCLMLVTYVPAFSLWLPSV 427