Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 434 a.a., TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3 from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  233 bits (594), Expect = 9e-66
 Identities = 140/450 (31%), Positives = 235/450 (52%), Gaps = 27/450 (6%)

Query: 1   MAVALLFILVIGMMIVGVPIAISLGLSSIL-FLLWHSDASLASVAQTLFNAFAGHYTLLA 59
           +A  L F++    ++  VPIA +L  +    ++L +      S+  T+       Y+L+ 
Sbjct: 2   LAACLGFLVAFAFILFQVPIATALAFAGFGGYVLLNGLTPALSMVATVTKDSTLVYSLIV 61

Query: 60  IPFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAI 119
           +P F+L    ++  G++  + R A A +G  RGGLA+A+VVAC  F A+ GSS AT   +
Sbjct: 62  LPLFVLMGNLVAGAGISGDLFRAAQAFIGKRRGGLAMATVVACGGFGAICGSSVATAATM 121

Query: 120 GSIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVVPG 179
           G + I  M K GY    ++  +   GTLGILIPPS++MVVY  AT   +G +F  G+VPG
Sbjct: 122 GKVAIPSMRKLGYGDSLSSAAVAAGGTLGILIPPSVIMVVYGVATQTHIGMLFAAGIVPG 181

Query: 180 LLA--GLMLIIAIYITARIKNLPKQPFVGWKEALKAAKEASWGLLLVV-IILGGIYGGIF 236
           L+A  G M  +   +  + +  P          L A   A W + L+  +++GGIYGG F
Sbjct: 182 LIAIGGYMAAVKWSVWRKPELAPLAEDNEQVNKL-ALLRALWPVALIFGVVMGGIYGGFF 240

Query: 237 TPTEAAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDAGKLT 296
           T  EA+ + A  +                      V      +   KD  A L D  + +
Sbjct: 241 TSVEASGIGAAAAL---------------------VFALTHHSLKLKDIYAILVDTARTS 279

Query: 297 IMLMFIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLVGGQFMEPSGL 356
            M+  I+  A +    +    + + + + + ++GL P   ++++ ++ ++ G  +E   +
Sbjct: 280 AMMFAIVLGAALFGEFVNLTGVHEGLLQVVKASGLPPFGIILLMIVLYILLGTVLESLSM 339

Query: 357 LVIVAPLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGV-AKMSMMNVVK 415
           +++  P+ FPI +ALG DP+  GI++V+ +EIG+ITPP+G+NLFV   V   + MM VV+
Sbjct: 340 ILLTVPIFFPIILALGYDPVWFGILVVMVVEIGLITPPIGVNLFVIRSVMPDIPMMTVVR 399

Query: 416 AALPWVGVMFLFLIIVTYVPWVSTWLPTLL 445
             +P++    L ++++  VP +S WLP LL
Sbjct: 400 GVIPFIVADVLRILLIAAVPALSLWLPNLL 429