Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  257 bits (657), Expect = 4e-73
 Identities = 151/428 (35%), Positives = 236/428 (55%), Gaps = 30/428 (7%)

Query: 12  GMMIVGVPIAISLGLSSILFLLWHSDASLASVAQTLF--NAFAG--HYTLLAIPFFILAS 67
           G+  +G+P A ++GL  I  +L         +   LF     AG   ++LLAIPFF+LA 
Sbjct: 14  GLAALGMPFAFAIGLCVIAVVL------SVGIEPMLFPQTVVAGTQSFSLLAIPFFMLAG 67

Query: 68  TFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIGSIVIAGM 127
             MS GG+++R++R A   V    GG+ +A V+A ++FAA+SGS+PAT  AIG+++I  M
Sbjct: 68  ELMSAGGLSQRLVRVAEVFVRHLPGGMDLAVVLAALVFAAVSGSAPATTAAIGAVMIPAM 127

Query: 128 VKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVVPGLLAGLMLI 187
           V  GY K +A  ++ +AG L  LIPPSI  V++      S+ R+FL GV+PGLL  L + 
Sbjct: 128 VARGYDKAYATALVVSAGVLAPLIPPSIAFVIWGVIAEQSISRLFLSGVLPGLLMALGMA 187

Query: 188 IAIYITARIKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIFTPTEAAAVAAV 247
           +     A    +P++P    +E   A +E  W LL  V++LGGIYGG FTPTEAA VA V
Sbjct: 188 VIAVSRALRSPIPREPRASLREIGTALREGVWALLAPVVVLGGIYGGAFTPTEAAVVACV 247

Query: 248 YSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDAGKLTIMLMFIIANAL 307
           Y+ FI   + R +     K +  P ++                    ++ ++M I+A + 
Sbjct: 248 YALFIGVVVERRL-----KLSQLPGIIS---------------KGMAISAIVMAIVAVSN 287

Query: 308 ILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLVGGQFMEPSGLLVIVAPLVFPI 367
               ++ +E++   +   +        T L+ +N+   +    M+   ++VI+ P++  I
Sbjct: 288 GFSFLIAQEQLAGKLAAWLALHFHERWTMLLALNVGFFLLAAVMDEVAIMVILGPMLIGI 347

Query: 368 AIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVAKMSMMNVVKAALPWVGVMFLF 427
           A   G+DPIH G M+V N+ IGM  PP+G  LFV   V+ + +  V +A LP+V +M + 
Sbjct: 348 ANQFGVDPIHFGAMIVTNVAIGMAAPPIGYCLFVGMAVSGLKLWPVARAILPFVAMMLVV 407

Query: 428 LIIVTYVP 435
           L++VTYVP
Sbjct: 408 LVLVTYVP 415