Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., TRAP transporter large permease from Magnetospirillum magneticum AMB-1

 Score =  217 bits (553), Expect = 5e-61
 Identities = 133/451 (29%), Positives = 230/451 (50%), Gaps = 34/451 (7%)

Query: 2   AVALLFILVIGMMIVGVPIAISLGLSSILFLLWHSDA-SLASVAQTLFNAFAGHYTLLAI 60
           A  +L ++++  + +G  IA+ L  + I  +L H +  SL      L  A   +Y L  I
Sbjct: 10  AFGILLLMLVVRIHIG--IAMFLAATGIYLVLNHGELNSLLFTLNNLVYARLSNYDLAVI 67

Query: 61  PFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIG 120
           P FIL   F + GG++K +   A  ++G F+GGLA A+  AC  F A+ GSS AT   +G
Sbjct: 68  PLFILMGQFATHGGLSKALFHAAGTLIGHFKGGLAYAATAACAAFGAICGSSLATAATMG 127

Query: 121 SIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVVPGL 180
            + +  + +  YS   A G +   GTLGILIPPS+ +VVY+  T  S+G++F+  V+PG+
Sbjct: 128 QVALPELTRRNYSGRLATGTLAAGGTLGILIPPSVPLVVYAVLTQESIGKLFVAAVIPGI 187

Query: 181 LA--GLMLIIAIYITARIKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIFTP 238
           +A  G M +I I ++   K  P    V  KE +KA       LL+ ++++ GIYGG   P
Sbjct: 188 IAALGYMAVIRIIVSLDPKAGPASERVSLKEMIKAQLGIIPVLLVFLVVIVGIYGGWANP 247

Query: 239 TEAAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDAGKLTIM 298
           TEAA++ A     IA                      V      KD K +++     T M
Sbjct: 248 TEAASIGAAACGIIA---------------------VVSGGMRFKDLKQSVFGTAIATAM 286

Query: 299 LMFIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLVGGQFMEPSGLLV 358
           +  ++  A +L   L   ++P  +   + ++G+ P+  L  +  I ++ G  M+   +++
Sbjct: 287 IFMVLIGADLLNSALALTQMPAELANWVKNSGMPPVAVLFTIIAIYVLLGCVMDSLAMIL 346

Query: 359 IVAPLVFPIAIALGI-------DPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVAK-MSM 410
           +  P+ +P+ + L           I  GI+ ++ +EIG++ PPVG+NL+V + +AK + +
Sbjct: 347 LTIPIFYPVVLGLDFYGMSVDDKSIWFGIVALMVVEIGLVHPPVGMNLYVINKIAKDVPL 406

Query: 411 MNVVKAALPWVGVMFLFLIIVTYVPWVSTWL 441
                  LP++   F+ ++++ + P ++ WL
Sbjct: 407 KETAMGVLPFLASDFIRIVVLVFFPPMALWL 437