Pairwise Alignments

Query, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., Predicted rhamnogalacturonide-specific TRAP-type transporter, large transmembrane component RhiC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  263 bits (671), Expect = 1e-74
 Identities = 148/447 (33%), Positives = 249/447 (55%), Gaps = 24/447 (5%)

Query: 2   AVALLFILVIGMMIVGVPIAISLGLSSI--LFLLWHSDASLASVAQTLFNAFAGHYTLLA 59
           A   L  + + ++ +G PI I + ++S   + L+   D S+ + AQ +F++    + LLA
Sbjct: 7   ASCTLIAVFVVLLAMGAPIGICIVIASFSTMMLVLPFDISMFATAQKMFSSLDS-FALLA 65

Query: 60  IPFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAI 119
           +PFF+L+   M++GG+A R++ FA    G   G L+  ++V  MMF A+SGS+ A   +I
Sbjct: 66  VPFFVLSGVIMNSGGIAARLVNFAKLFTGKLPGSLSYTNIVGNMMFGAISGSAIAASTSI 125

Query: 120 GSIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATN-VSVGRMFLGGVVP 178
           G +++    + GY + FAA V   +   G+LIPP+   ++Y+ A+   S+  +F GG+V 
Sbjct: 126 GGVMVPMSAREGYDRGFAAAVNIASAPTGMLIPPTTAFILYALASGGTSIAALFAGGLVA 185

Query: 179 GLLAGLMLIIAIYITARIKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIFTP 238
           G+L G+  ++   + A+ +N      V    ALK A EA   LLL+VII+GGI  GIFT 
Sbjct: 186 GVLWGVGCMLVTLVVAKRRNYRVFFTVQKGMALKVAVEAIPSLLLIVIIVGGIVQGIFTA 245

Query: 239 TEAAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDAGKLTIM 298
            EA+A+A VY+  +    YR                    T   KD  + L     +T +
Sbjct: 246 IEASAIAVVYTLLLTMVFYR--------------------TLKIKDLPSILLQTVVMTGV 285

Query: 299 LMFIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLVGGQFMEPSGLLV 358
           +MF++A +  +   ++   IP  +++ +L      +  L+V+ + LL+ G FM+    ++
Sbjct: 286 IMFLLATSSAMSFSMSITNIPAALSDMILGISANKLVILLVITVFLLIIGAFMDIGPAIL 345

Query: 359 IVAPLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVAKMSMMNVVKAAL 418
           I  P++ PI   LG+DP+H GI+M+ N+ IG ITPPVG  L+V + V K+ +  V+K  L
Sbjct: 346 IFTPILLPIMAKLGVDPVHFGIIMIYNLAIGTITPPVGSGLYVGASVGKVKVEEVIKPLL 405

Query: 419 PWVGVMFLFLIIVTYVPWVSTWLPTLL 445
           P+ G +   L+++TY+P ++ +LP LL
Sbjct: 406 PFYGAIIGVLLLITYIPEITLFLPRLL 432