Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., PEP-CTERM-box response regulator transcription factor from Rhodanobacter sp000427505 FW510-R12

 Score =  299 bits (766), Expect = 1e-85
 Identities = 179/445 (40%), Positives = 256/445 (57%), Gaps = 15/445 (3%)

Query: 6   LIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPG-----LS 60
           +++D++ ++  L  SFE  D+     A      LA+  +  P V++ D+ LP        
Sbjct: 2   IVEDDAGLQRQLRWSFEDYDV---VMAGDRPTALALLRRHEPAVVLQDLGLPPDATGTAE 58

Query: 61  GQNLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEK 120
           G   ++ +L +     ++++TG+GD   AVK++  GAYDF  KP   E L   V RA   
Sbjct: 59  GFATVAGILQEAPHTKIVVVTGNGDRDNAVKSIGCGAYDFCSKPLELEVLRLIVDRAFRV 118

Query: 121 RRLTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKEL 180
             L  ENR+L+     S T    IIG + A+      I +V+ + A +LL GETGTGKE+
Sbjct: 119 HELEAENRKLRNQ---STTTLEGIIGSSEAMLDAFRLIEKVSPSNATVLLLGETGTGKEV 175

Query: 181 VARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTL 240
            AR++H  S+RR+  FVAINC A+PE L+E+EL+GHEKGA+TGA  +  GK E A  GTL
Sbjct: 176 FARAVHRLSTRRDGPFVAINCAAIPETLLEAELFGHEKGAYTGAHKQTKGKIELAVNGTL 235

Query: 241 FLDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQD 300
            LDEI  MP   Q +LLR L+ERV+ERIG  E IP+D+R+I AT  DL      G+FR+D
Sbjct: 236 LLDEIGDMPFALQAKLLRFLEERVVERIGGREPIPVDVRIICATHQDLPALIGAGRFRED 295

Query: 301 LYYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGN 360
           L+YR++ VT+ +PPLRER  DI  L  HFL  AA+R+G+A    TA  ++++ +  W GN
Sbjct: 296 LFYRVSEVTIRLPPLRERAGDIAPLARHFLEQAASRHGRAVHGFTAKALKAIEACPWRGN 355

Query: 361 VRELRNAAERYVLL--GKLAQFAESH--EPKSKLLGLNEQVAEFEKSLLEQTLIECGGSI 416
           VREL N     V++  GK  +  E H     S +  L +   + EK  ++  L   GG++
Sbjct: 356 VRELENVVNSAVIMADGKQIELKELHLGAAGSDIPDLRKVRNDAEKHAIQLALTRAGGNL 415

Query: 417 KATMERLHLPRKTLYDKMQKYQLDK 441
                 L + R TLYD + K+ L K
Sbjct: 416 SHVAGLLGISRPTLYDLLDKHGLKK 440