Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., sigma-54 dependent transcriptional regulator from Rhodanobacter sp000427505 FW510-R12

 Score =  290 bits (742), Expect = 7e-83
 Identities = 169/463 (36%), Positives = 264/463 (57%), Gaps = 32/463 (6%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V +IDDE DIR  L  +    DL      +V EA  A+  +   L   +D+ LP  +G  
Sbjct: 6   VLVIDDERDIRELLTITLGRMDLQVDAVGTVAEARRALAERSYDLCF-TDMRLPDGTGHE 64

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           ++  +  +  ++PV +IT +G++  AV A+  GA+DF+ KP   + L   V  A+   RL
Sbjct: 65  IIELIAAEHPDMPVAMITAYGNVDAAVNALKAGAFDFVSKPVDIQMLRGLVRTAL---RL 121

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
             E R    + K   +   R+IG+++A+Q +R TIA++A  QA + + GE+G GKELVAR
Sbjct: 122 AEERRSGAAAAKTGDS--SRLIGDSSAMQQVRATIAKLARNQAPVYIAGESGVGKELVAR 179

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            +HEQ  R    FV +NCGA+P  L+ESE +GH KG+FTGA + + G F+ AQGGTLFLD
Sbjct: 180 LIHEQGPRASGPFVPVNCGAIPSELMESEFFGHRKGSFTGASTDKEGLFQAAQGGTLFLD 239

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           E+  +P+  Q++LLR +QE+ +  IG  + IP+D R+++AT  +L Q   +G+FRQDL+Y
Sbjct: 240 EVAELPLHMQVKLLRAIQEKAVRPIGGRDEIPVDARILSATHKNLGQLVEQGQFRQDLFY 299

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           R+N++ L +PPLRERR D+  L    L   A + G++   L+ S   +L ++D+PGNVRE
Sbjct: 300 RINVIELRVPPLRERRGDVSQLSAFILKALAGKSGESVGQLSPSARGALEAYDFPGNVRE 359

Query: 364 LRNAAERYVLL--GKLAQFAE----------SHEPKSKLL--------------GLNEQV 397
           L N  ER + +  G   + A+          SHEP +                 GL++ +
Sbjct: 360 LENILERAMAMCDGSTIEAADLMLPQRSARPSHEPAAPGQPSAPAAAASTGADGGLDDYI 419

Query: 398 AEFEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQKYQLD 440
           +  E++ + + L E   +  A   +L +  + L  K++K  +D
Sbjct: 420 SNLERTAIVKALEESRYNKTAAARKLGITFRALRYKLKKLGID 462