Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., Regulatory protein AtoC from Xanthobacter sp. DMC5

 Score =  301 bits (771), Expect = 3e-86
 Identities = 175/450 (38%), Positives = 265/450 (58%), Gaps = 24/450 (5%)

Query: 4   VFLIDDE----SDIRIALAQ-SFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPG 58
           + ++DDE      +  ALA+  FE    N     +V +AL    +Q + LV+ SD+ +P 
Sbjct: 8   ILIVDDEVRHGEVLEAALAERGFEAVSTN-----TVAKALAYCASQPVDLVL-SDLRMPD 61

Query: 59  LSGQNLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAI 118
             G +LL ++ H+  ELPVI++T +  +  AV  + DGA+D++ KP   + ++ T+ RA+
Sbjct: 62  RGGADLLRALKHEQPELPVIIMTAYASVRGAVDLVKDGAFDYVAKPLDLDDVVATIARAL 121

Query: 119 EKRRLTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGK 178
             + +  EN +L+  L+        ++GE+A    +   + +VA ++A +LL GE+GTGK
Sbjct: 122 RLKAVESENSRLRSELEERYRFD-NLLGESAVFHHVLRQVTEVAPSRASVLLLGESGTGK 180

Query: 179 ELVARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGG 238
           ELVAR++H  S RR+  FVA+NC A+PE LIESEL+GH KGAFTGA   R G+F  A  G
Sbjct: 181 ELVARAIHYNSPRRDLPFVAVNCAAIPETLIESELFGHVKGAFTGATGVREGRFAAANQG 240

Query: 239 TLFLDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFR 298
           TLFLDEI  MP+  Q ++LR LQE+  E +GS++ + +D+R+IAAT  DL++  A G FR
Sbjct: 241 TLFLDEIADMPLPVQAKVLRALQEQSFEPVGSSKSVSVDVRIIAATHKDLQKEIAAGTFR 300

Query: 299 QDLYYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWP 358
            DLYYRL +  +T+PPLRER +DI  L  HFL  A    GK    LT      L  + WP
Sbjct: 301 MDLYYRLAVFPITLPPLRERTDDIVLLADHFLAAATRDMGKRVKGLTPEAQAMLTRYRWP 360

Query: 359 GNVRELRNAAERYVLL--------GKLAQFAESHEP--KSKLLG--LNEQVAEFEKSLLE 406
           GNVREL+N  ER  ++        G L  F  + +   +S  L   L+ +++  E+  + 
Sbjct: 361 GNVRELQNCMERAAIVARGDLVGPGDLLLFEANGDTDVQSHTLNGDLDSELSRIEREFVL 420

Query: 407 QTLIECGGSIKATMERLHLPRKTLYDKMQK 436
           Q L + GG      E+L +  ++L+ +++K
Sbjct: 421 QALKDSGGVQARAAEKLGITERSLWHRIKK 450