Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., C4-dicarboxylate transport transcriptional regulatory protein DctD from Xanthobacter sp. DMC5

 Score =  393 bits (1009), Expect = e-114
 Identities = 210/444 (47%), Positives = 295/444 (66%), Gaps = 3/444 (0%)

Query: 3   DVFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQ 62
           DV  IDD++ +R A  Q+  LA L    + S  EAL  I A   P V+V+D+ +P + G 
Sbjct: 7   DVAFIDDDAVLRAANVQALMLAGLTVAGYGSAMEALEVIDAD-FPGVVVTDVRMPRIDGL 65

Query: 63  NLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRR 122
            L   +  +D++LPVIL+TGHGDI+MAV AM +GAYDF+ KP+A ERL+ ++  A+++RR
Sbjct: 66  ELFRRLKARDADLPVILVTGHGDIAMAVDAMREGAYDFLAKPYASERLVASIRHALDRRR 125

Query: 123 LTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVA 182
           L LENR+LKR++  +Q   P ++G +A +  LR  + Q+AD   D+L+ GETG+GKE+VA
Sbjct: 126 LVLENRELKRAVATTQDDLP-LLGTSAVMARLRQMLRQIADADVDVLVEGETGSGKEVVA 184

Query: 183 RSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFL 242
            +LH  S R  +  VA+NCGA+PE +IESEL+G+E GAFTGA  +RVG+ EHA GGTLFL
Sbjct: 185 TALHRWSRRAARPLVAVNCGALPETVIESELFGYEAGAFTGAVKKRVGRIEHAHGGTLFL 244

Query: 243 DEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLY 302
           DEIE+M    Q++LLRVL+ R I  +G+NE   +DIRV+AA+K+DL     +G FR+DLY
Sbjct: 245 DEIEAMSPALQVKLLRVLEAREIAPLGTNETRRVDIRVVAASKVDLPALVKQGSFREDLY 304

Query: 303 YRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVR 362
           YRL++  + IP LRERR D+P LF HFL  AA R+ +    L A  ++ L  HDWPGNVR
Sbjct: 305 YRLHVAAVRIPALRERRGDVPLLFGHFLARAAERFNRPPPELDAGVLRHLAEHDWPGNVR 364

Query: 363 ELRNAAERYVL-LGKLAQFAESHEPKSKLLGLNEQVAEFEKSLLEQTLIECGGSIKATME 421
           EL + AER  L L +  Q +   E       L E+V  FE   +   L    G ++AT+ 
Sbjct: 365 ELVHYAERVALGLVEPEQPSAPAEAGGGKGTLPERVDAFEAQEIRAALEANKGDVQATVA 424

Query: 422 RLHLPRKTLYDKMQKYQLDKESYK 445
            L +PRKT YDK++++ +D+ +Y+
Sbjct: 425 ALGIPRKTFYDKLRRHGIDQAAYR 448