Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., C4-dicarboxylate ABC transporter from Pseudomonas simiae WCS417

 Score =  427 bits (1099), Expect = e-124
 Identities = 225/444 (50%), Positives = 304/444 (68%), Gaps = 11/444 (2%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V ++DDE+ IR A+ Q   L+    Q F+  EE L  +  +  P VI+SD+ +PGLSG  
Sbjct: 5   VIVVDDEASIRTAVEQWLSLSGFEVQLFSRAEECLAQLP-KDFPGVILSDVRMPGLSGLE 63

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL+ V  +D++LPVIL+TGHGD+ MAV+AM DGAYDF+EKPF+P+ L++++ RA++KR L
Sbjct: 64  LLAEVQRRDADLPVILLTGHGDVPMAVEAMRDGAYDFLEKPFSPDALLNSLRRALDKRGL 123

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
            LENR+L +       L   ++G +  +QTLR  +  +A    ++L+ GETG+GKELVAR
Sbjct: 124 ILENRRLHQQADHRAQLESTLLGVSRGLQTLRRQVLDLASLPVNVLIRGETGSGKELVAR 183

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            LH+   R ++ FVA+NC A+PE L E+EL+GHE GAFTGA  +R+GK E+A GGTLFLD
Sbjct: 184 CLHDFGPRAKKPFVALNCAAIPEQLFEAELFGHESGAFTGAQGKRIGKLEYAHGGTLFLD 243

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EIESMP+  Q++LLRVLQE+ +ER+GSN+ I +D+R+IAATK DL + A  G+FR+DL Y
Sbjct: 244 EIESMPLAQQVKLLRVLQEQKLERLGSNQSIHVDLRIIAATKPDLLEEARAGRFREDLAY 303

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN+  L +PPLRERREDIP LF HF   AA R G++   L+ + +  LLSHDWPGNVRE
Sbjct: 304 RLNVAQLRLPPLRERREDIPLLFDHFAQSAAERLGRSVEPLSGAQLGRLLSHDWPGNVRE 363

Query: 364 LRNAAERYVL-LGKLAQFAESHEPKSKLLG--LNEQVAEFEKSLLEQTLIECGGSIKATM 420
           L N AER VL LG+        EP+    G  L  Q   FE   L+  L    G IKA +
Sbjct: 364 LANVAERQVLGLGE-------PEPEGVEAGQSLAAQQEAFEAHCLKAALTRHKGDIKAVL 416

Query: 421 ERLHLPRKTLYDKMQKYQLDKESY 444
             L LPR+TL +KMQ++ L +E +
Sbjct: 417 AELQLPRRTLNEKMQRHGLVREMF 440