Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  440 bits (1131), Expect = e-128
 Identities = 235/442 (53%), Positives = 308/442 (69%), Gaps = 6/442 (1%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V LIDD+  +R AL Q+ +LA LN          L A  ++  P V+VSDI +PG+ G  
Sbjct: 9   VVLIDDDPHLRQALCQTLDLAGLNVLTLGEAT-GLTARLSRDWPGVVVSDIRMPGMDGLE 67

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL+ +  QD ELPV+LITGHGD+ +AV+AM  GAYDF+EKPFA + L+D+V RA+  RRL
Sbjct: 68  LLAELHGQDPELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASDALLDSVRRALALRRL 127

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
            L+NR L+ +L   Q L  R++G +  +  LR+ I  +A T+AD+L+ GETG GKE+VAR
Sbjct: 128 VLDNRSLRLALSDRQQLSTRLVGHSPQMLRLREQIGALAATRADVLILGETGAGKEVVAR 187

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
           +LH+ SSRR   FVAIN GA+ E+++ESEL+GHE GAFTGA  RR+GKFE A GGTLFLD
Sbjct: 188 ALHDLSSRRSGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEFANGGTLFLD 247

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EIESM +  Q++LLR+LQERV+ER+G N+LIPLDIR+IAATK DL+Q+A +G+FR DLYY
Sbjct: 248 EIESMSLDVQVKLLRLLQERVVERLGGNQLIPLDIRIIAATKEDLRQSADQGRFRADLYY 307

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN+  L IPPLRER ED   LF HF   A++R+G     L       LL H WPGNVRE
Sbjct: 308 RLNVAPLRIPPLRERGEDALMLFQHFADEASSRHGLPLHELQPGQRALLLRHSWPGNVRE 367

Query: 364 LRNAAERYVLLGKLAQFAESHEPKSKLL-----GLNEQVAEFEKSLLEQTLIECGGSIKA 418
           L+NAAER+ L  +LA       P +  L     GL+EQV +FEKSL+   L     S+++
Sbjct: 368 LQNAAERFALGLELALDNTPDNPSAGTLTSTPGGLSEQVEQFEKSLIAAELTRPHSSMRS 427

Query: 419 TMERLHLPRKTLYDKMQKYQLD 440
             E L +PRKTL+DK++K+ L+
Sbjct: 428 LAEALGVPRKTLHDKLRKHGLN 449