Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  296 bits (758), Expect = 9e-85
 Identities = 170/461 (36%), Positives = 268/461 (58%), Gaps = 24/461 (5%)

Query: 3   DVFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQ 62
           ++ ++DDE  +   LA +    D+      +   AL  ++ + + LVI SD  +PG+ G 
Sbjct: 4   NILVVDDEPKLCDLLASALGQNDVQVFIAGNGLHALKVLEQEDIDLVI-SDWRMPGMDGP 62

Query: 63  NLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRR 122
            LL+ +  +   +PVI++T +  +  AV++M +GAYD+I KPF  + L  TV +A++ R 
Sbjct: 63  ALLAEIKVRYPHVPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVAKALQFRD 122

Query: 123 LTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVA 182
           +  +N +L+  L         ++G++ A + +   +  V D+ A ILL GE+GTGKE+VA
Sbjct: 123 IMRDNARLRAELDEHAQFDS-LVGDSPAFRKVLQAVDSVRDSSATILLTGESGTGKEMVA 181

Query: 183 RSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFL 242
           R++H+  SR ++ FVA+NC A+PE L+ESE++GH KGAFTGA + RVG+F+ A  GTLFL
Sbjct: 182 RAIHKHGSRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFL 241

Query: 243 DEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLY 302
           DE+  MP+  Q ++LR LQERVIE +G      +D+RVIAAT  +L  A A  +FR+DLY
Sbjct: 242 DEVGDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLDAVANKEFREDLY 301

Query: 303 YRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVR 362
           YRLN+  + +P LRER EDI  L  HF    +A  GK  T  +A  +Q++ ++ WPGN+R
Sbjct: 302 YRLNVFPIPLPSLRERVEDIAPLARHFAQTLSATAGKRITGFSAEALQAMAAYHWPGNIR 361

Query: 363 ELRNAAERYVLL------------GKLAQFAESHEPKSKLLG--------LNEQVAEFEK 402
           EL+N  ER  ++            G L     +    + +L         L+  +AE EK
Sbjct: 362 ELQNCVERATIVAASPVIEDIDLPGYLFASKPNQGDVTAILSDGPGIPQDLDAALAEVEK 421

Query: 403 SLLEQTLIECGGSIKATMERLHLPRKTLYDKMQK--YQLDK 441
           + +   L E  G   A   ++ +  ++ + +++K   Q+DK
Sbjct: 422 AYILAALQESNGVQAAAAAKIGISERSFWYRLKKLGIQVDK 462