Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 453 a.a., Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake from Variovorax sp. SCN45

 Score =  437 bits (1123), Expect = e-127
 Identities = 231/446 (51%), Positives = 313/446 (70%), Gaps = 5/446 (1%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V L++D+ D+R++  Q   LA    + FAS E A   I   G+P +++SD+ LPG+SG  
Sbjct: 9   VLLVEDDEDVRLSTTQVLTLAGFEVEAFASAERARAHISF-GVPAIVISDVRLPGMSGTE 67

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
            L  +   D+ELPVIL+TGHG I+MAV+AM +GAYDFIEKPF+ ERL+  V  AIE+R+L
Sbjct: 68  WLGELHTADAELPVILVTGHGHIAMAVQAMREGAYDFIEKPFSSERLVAIVRHAIERRQL 127

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
           TL+ R L+ +L+    +   +IG +A +Q +R T+  +A+T AD+L++GETGTGKELVA+
Sbjct: 128 TLQVRTLRDALENWNGIQSVLIGRSAQMQQVRRTVMTLAETSADVLIYGETGTGKELVAQ 187

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            LH  S RR ++FV +NCG +PE L ESEL+GHE GAFT A+  RVGKFE+A GGTLFLD
Sbjct: 188 CLHAHSERRRRHFVPLNCGGLPEALAESELFGHEAGAFTSANRARVGKFEYANGGTLFLD 247

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EIESMPM  QI+LLR LQER IERIGSN+ IP D RV+AA+K DLK+ +   KFR DLYY
Sbjct: 248 EIESMPMPVQIKLLRALQERSIERIGSNKAIPFDCRVVAASKEDLKEMSDRQKFRADLYY 307

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RL +  + +PPLRERREDIP LF HF L+AA RY +AA  LT + +  L+++ WPGNVRE
Sbjct: 308 RLGVAFIELPPLRERREDIPLLFEHFTLLAANRYERAAQPLTNAQLADLMAYAWPGNVRE 367

Query: 364 LRNAAERYV--LLG-KLAQFAESHEPKSKL-LGLNEQVAEFEKSLLEQTLIECGGSIKAT 419
           LRN A+R+V  LLG +L Q   + E    L   L +QV  FE++++ + L +  G   AT
Sbjct: 368 LRNVADRFVLGLLGERLTQTRGTGEGLPALPRALPQQVEAFERAVIVEALRKHKGDQPAT 427

Query: 420 MERLHLPRKTLYDKMQKYQLDKESYK 445
              L + R+TL+DK++K+ +  + +K
Sbjct: 428 AAALAIARQTLHDKLRKFDILADDFK 453