Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 466 a.a., nitrogen regulation protein NR(I) from Vibrio cholerae E7946 ATCC 55056

 Score =  306 bits (785), Expect = 7e-88
 Identities = 170/409 (41%), Positives = 251/409 (61%), Gaps = 9/409 (2%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V+++DD+S IR  + ++   A +  + FA  E  LLA++ +  P V+VSDI +PG+ G  
Sbjct: 6   VWVVDDDSSIRWVMEKTLSSAHIKCETFADAESVLLALERE-TPDVLVSDIRMPGMDGIA 64

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL+ V  +  ELPVI++T H D+  AV A   GA++++ KPF  +  +  V RAI   + 
Sbjct: 65  LLNQVHQRTPELPVIIMTAHSDLDAAVNAYQQGAFEYLPKPFDVDETLTLVERAIAHGQ- 123

Query: 124 TLENRQLKRSLKVSQTLG-PRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVA 182
                Q K S + S+    P IIGE  A+Q +   I +++ +   +L+ GE+GTGKELVA
Sbjct: 124 ----EQRKTSHRPSENYSAPEIIGEAPAMQEVFRAIGRLSRSSISVLINGESGTGKELVA 179

Query: 183 RSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFL 242
            +LH  S R ++ F+A+N  A+P++LIESEL+GHEKGAFTGA++ R G+FE A GGTLFL
Sbjct: 180 HALHRHSPRAQKPFIALNMAAIPKDLIESELFGHEKGAFTGANTVRQGRFEQANGGTLFL 239

Query: 243 DEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLY 302
           DEI  MP+  Q RLLRVL +    R+G +  I +D+R++AAT  +L++   +GKFR+DL+
Sbjct: 240 DEIGDMPLDIQTRLLRVLADGQFYRVGGHVAIKVDVRIVAATHQNLEKLVHQGKFREDLF 299

Query: 303 YRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVR 362
           +RLN++ + IP LRERR+DI  L  HFL +AA   G     L    V  L   DWPGNVR
Sbjct: 300 HRLNVIRIHIPSLRERRQDIEKLTKHFLALAAKELGVEMKTLNPRTVDILTKLDWPGNVR 359

Query: 363 ELRNAAERYVLLGKLAQFAESHEPKSKLLGLNEQVAEFEKSLLEQTLIE 411
           +L N      ++   ++   S  P S+LL    + + F+  +  Q  +E
Sbjct: 360 QLENMCRWLTVMASGSEVLPSDLP-SELLS-ERKASHFDNDISWQKQLE 406