Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 438 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score =  311 bits (798), Expect = 2e-89
 Identities = 178/437 (40%), Positives = 261/437 (59%), Gaps = 16/437 (3%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           + L+DD+ D+R A+AQ+  LA    + FA   +AL AI A   P V+VSD+ +P +SG +
Sbjct: 9   IALVDDDDDLRAAMAQTLTLAGHEVRAFARAADALAAIDAD-FPGVVVSDVRMPHMSGID 67

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           L  ++  +D+ELPVIL+TGHGD+ MAV A+  GA+DF+ KPF P+ L+ +V RA EKR L
Sbjct: 68  LFRALHARDAELPVILVTGHGDVPMAVDALKAGAWDFLTKPFNPDALLASVARASEKRLL 127

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
            +ENR+L+    V   +   +IG + AI+ LRD +A +ADT  DIL+ GETGTGKELVAR
Sbjct: 128 VIENRRLR--AMVDTAVASPLIGHSPAIERLRDMVATLADTNIDILVEGETGTGKELVAR 185

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            +H++S R    FV+I C AVP+ + E+ L+G         +    G+   A  GTLFLD
Sbjct: 186 MIHQRSRRASAQFVSIACAAVPDAIAETSLHGESLAGRAPLE----GRLARAHQGTLFLD 241

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           +++      Q  L++ L++R++  +G+ E  P+D+RVI      + Q       +  L Y
Sbjct: 242 DVDQSGPALQAHLIQFLEDRLVRPVGAREPQPVDLRVIGC----MTQQGQAATIQPALLY 297

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RL  V L IPPLRERREDIP +F H L  AA R+ +    ++ + +  LL HDWPGNV E
Sbjct: 298 RLAAVRLHIPPLRERREDIPLIFAHLLDAAARRFRRTVPPVSRAVLAHLLDHDWPGNVHE 357

Query: 364 LRNAAERYVLLGKLAQFAESHEPKSKLLGLNEQVAEFEKSLLEQTLIECGGSIKATMERL 423
           L   AER  L  +    A+        L L+ ++  FE+  + + +   GG +   +ERL
Sbjct: 358 LGRLAERLALGLEQEPVAD-----GATLPLDARMDAFERMAIIEAIQATGGDMGQAIERL 412

Query: 424 HLPRKTLYDKMQKYQLD 440
            LPRKT Y ++++  +D
Sbjct: 413 GLPRKTFYYRVRRLGID 429