Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., two component system AtoC DNA-binding transcriptional activator from Pseudomonas putida KT2440

 Score =  298 bits (764), Expect = 2e-85
 Identities = 184/448 (41%), Positives = 259/448 (57%), Gaps = 34/448 (7%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V L++D+  +R AL  + E+     Q   S EEAL A+      LV VSD+ +PG+ G  
Sbjct: 5   VLLVEDDRVLRQALGDTLEIGGFAYQAVGSAEEALEAVLEDAFSLV-VSDVNMPGMDGHQ 63

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LLS +  Q  +LPV+L+T H  +  AV+AM  GA D++ KPF P+ L++ V R    R  
Sbjct: 64  LLSQLRRQQPQLPVLLMTAHAAVERAVEAMRQGAADYLVKPFEPKALLNLVERHAAGR-- 121

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
                       V+   GP +  E A+ Q L +  A+VA + + +L+ GE+GTGKE++AR
Sbjct: 122 ------------VTGEEGP-VACEPASRQLL-ELAARVARSDSTVLISGESGTGKEVLAR 167

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            +H+QS R  Q FVAINC A+P+N++E+ L+GHEKGAFTGA + + GKFE A+GGTL LD
Sbjct: 168 YIHQQSPRAAQPFVAINCAAIPDNMLEATLFGHEKGAFTGAIAAQAGKFEQAEGGTLLLD 227

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EI  MPM  Q +LLRVLQER +ER+G  + I LDIRV+A T  DL    A G+FR+DLYY
Sbjct: 228 EISEMPMALQAKLLRVLQEREVERVGGRKPISLDIRVLATTNRDLAGEVAAGRFREDLYY 287

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RL++  L   PLRER  DI  L    L    A+   A+  L+ +    L ++ WPGNVRE
Sbjct: 288 RLSVFPLAWRPLRERPGDILQLAERLLARHVAKMKHASVRLSPAARACLQAYAWPGNVRE 347

Query: 364 LRNAAERYVLL--GKLAQFAE-----------SHEPKSKLL----GLNEQVAEFEKSLLE 406
           L NA +R ++L  G + + A+             EP  +++    GL + +   E  ++ 
Sbjct: 348 LDNALQRALILQQGGVIEAADFCLAGAIPLSAGTEPSLEVVADAGGLGDDMRRHEYQMII 407

Query: 407 QTLIECGGSIKATMERLHLPRKTLYDKM 434
            TL    G  K   ERL +  +TL  K+
Sbjct: 408 DTLRAERGRRKEAAERLGISPRTLRYKL 435