Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., C4-dicarboxylate transport transcriptional regulatory protein from Pseudomonas putida KT2440

 Score =  421 bits (1082), Expect = e-122
 Identities = 219/442 (49%), Positives = 298/442 (67%), Gaps = 7/442 (1%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V ++DDE+ IR A+ Q   L+  + + FA  E A LA   Q  P VI+SD+ +PG+ G  
Sbjct: 5   VIVVDDEASIRTAVEQWLSLSGFSVELFARAE-ACLAHLPQHFPGVIISDVRMPGMDGLQ 63

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL  +   D +LPVIL+TGHGD+ MAV+AM  GAYDF+EKPF P+ L+ ++ RA+EKR+L
Sbjct: 64  LLERLQANDPDLPVILLTGHGDVPMAVEAMRSGAYDFLEKPFTPQDLLGSLRRALEKRQL 123

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
            LENR+L     +   L   ++G +  +Q LR  +  +A    ++L+ GETG+GKE VAR
Sbjct: 124 VLENRRLHEQADLKSRLEGTLLGMSQGLQQLRRQVLDLAGLPVNVLIRGETGSGKERVAR 183

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            LH+   R  + FVA+NC A+PE+L E+EL+GHE GAFTGA  +R+GK E+A GGT+FLD
Sbjct: 184 CLHDFGPRAAKPFVALNCAAIPESLFEAELFGHESGAFTGAQGKRIGKLEYANGGTVFLD 243

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EIESMP+  Q +LLRV+QE+ +ER+G+N+ I +D+R+IAATK DL + A  G+FR+DL Y
Sbjct: 244 EIESMPLAQQAKLLRVIQEQKLERLGANQSISVDLRIIAATKPDLLEEARAGRFREDLAY 303

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN+  L + PLRERREDIP LF HF   A  + G+AA  L+ + +  LLSHDWPGNVRE
Sbjct: 304 RLNVAELRLAPLRERREDIPLLFEHFARAAGEKLGRAAPPLSGAQLAQLLSHDWPGNVRE 363

Query: 364 LRNAAERYVL-LGKLAQFAESHEPKSKLLGLNEQVAEFEKSLLEQTLIECGGSIKATMER 422
           L NAAER+ L LG     + + E       L EQ+  FE   L   L + GG IK+ ME 
Sbjct: 364 LANAAERHALGLG-----SPNIEVAPAGQSLGEQMEAFEAQCLRAALRQHGGEIKSVMEA 418

Query: 423 LHLPRKTLYDKMQKYQLDKESY 444
           L LPR+TL +KMQ++ L +E +
Sbjct: 419 LQLPRRTLNEKMQRHGLVREDF 440