Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., C4-dicarboxylate transport transcriptional regulatory protein from Pseudomonas putida KT2440

 Score =  437 bits (1124), Expect = e-127
 Identities = 229/436 (52%), Positives = 297/436 (68%), Gaps = 2/436 (0%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V +++D+  + +   Q+  L D+  +   S E+AL  I       ++VSDI LPG+ G  
Sbjct: 8   VLIVEDDPHVLLGCQQALALEDIACEGVGSAEQALERI-GDDFAGIVVSDIRLPGIDGLE 66

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL+ +  +D  LPV+LITGHGDI MAV AM +GAYDF+EKPF+PERL+D V RA+E+R L
Sbjct: 67  LLNRLKARDRSLPVVLITGHGDIDMAVGAMRNGAYDFMEKPFSPERLVDVVRRALEQRGL 126

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
           + E   L+R L    +L  RIIG + A++ LR+ IA VADT A++L+ GETGTGKELVAR
Sbjct: 127 SREVVALRRQLAEQSSLEGRIIGRSPAMEHLRELIANVADTSANVLIEGETGTGKELVAR 186

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            LH+ S R+   FVA+NCG +PENL ESE++GHE  AFTGA  RR+GK EHA GGTLFLD
Sbjct: 187 CLHDFSRRQSHPFVALNCGGLPENLFESEIFGHEANAFTGAGKRRIGKIEHANGGTLFLD 246

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           E+ESMP+  QI+LLRVLQER +ER+GSN+ IP+D RVIAATK DL      G+FR DLYY
Sbjct: 247 EVESMPINLQIKLLRVLQERTLERLGSNQSIPVDCRVIAATKADLDALGQSGQFRSDLYY 306

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN+VTL +PPLRERREDI  LF HFL  +A R+ +    L +  +  L++HDWPGNVRE
Sbjct: 307 RLNVVTLELPPLRERREDILQLFEHFLQQSALRFDRETPTLDSQTLSRLMAHDWPGNVRE 366

Query: 364 LRNAAERYVLLGKLAQFAESHEPKSKLLGLNEQVAEFEKSLLEQTLIECGGSIKATMERL 423
           LRN AERY L     +   S      LL   E V  FE++LL   L   GG++    + L
Sbjct: 367 LRNVAERYALGLPAFKKGPSGGANQGLL-FAEAVEAFERNLLTDALQRTGGNLSQASQEL 425

Query: 424 HLPRKTLYDKMQKYQL 439
            + + TL+DK++KY L
Sbjct: 426 GMAKTTLFDKVKKYGL 441