Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., C4-dicarboxylate transport transcriptional regulatory protein from Pseudomonas putida KT2440

 Score =  449 bits (1155), Expect = e-131
 Identities = 237/442 (53%), Positives = 318/442 (71%), Gaps = 6/442 (1%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V L+DD+  +R AL+Q+ +LA L     A  +     I+A   P V+VSDI +PG+ G  
Sbjct: 13  VILVDDDPHLRQALSQTLDLAGLKVVALAEAQGLAERIEADW-PGVVVSDIRMPGIDGLQ 71

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL  +  +DSELPV+LITGHGD+ +AV+AM  GAYDF+EKPFA + L+D+V RA+  RRL
Sbjct: 72  LLEQLHGRDSELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFATDALLDSVRRALALRRL 131

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
            L+NR L+ +L   Q L  R++G + A+  LR+ I  +A T+AD+L+ GETG GKE+VAR
Sbjct: 132 VLDNRSLRLALSDRQQLATRLVGHSPAMLRLREQIGALAGTRADVLILGETGAGKEVVAR 191

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
           +LH+ SSR E  FVAIN GA+ E+++ESEL+GHE GAFTGA  RR+GKFE A GGTLFLD
Sbjct: 192 ALHDLSSRSEGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEFANGGTLFLD 251

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EIESM +  Q++LLR+LQERV+ER+G N+LIPLDIR+IAATK DL+Q+A +G+FR DLYY
Sbjct: 252 EIESMSLDVQVKLLRMLQERVVERLGGNQLIPLDIRIIAATKEDLRQSADQGRFRADLYY 311

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN+  L IPPLRER +DI  LF HF   A+ R+G +  AL  +    LL HDWPGNVRE
Sbjct: 312 RLNVAPLRIPPLRERGDDILVLFQHFADAASQRHGLSPHALQPAQRALLLRHDWPGNVRE 371

Query: 364 LRNAAERYVLLGKLA---QFAESHEPKSKLL--GLNEQVAEFEKSLLEQTLIECGGSIKA 418
           L+NAAER+ L  +LA   Q   +  P + +L   L+EQV +FE+SL+   L +  GS+++
Sbjct: 372 LQNAAERFALGLELALDGQAPSAAAPAAPMLSGNLSEQVEQFERSLIAAELAQPHGSMRS 431

Query: 419 TMERLHLPRKTLYDKMQKYQLD 440
             E L +PRKTL+DK++K+ L+
Sbjct: 432 LAEALGIPRKTLHDKLRKHGLN 453