Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., Sigma-54 dependent response regulator from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  295 bits (756), Expect = 2e-84
 Identities = 162/374 (43%), Positives = 229/374 (61%), Gaps = 1/374 (0%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           + ++DDE  +   L ++           +S E+    ++   + LVI+ DI LPG SG  
Sbjct: 22  ILIVDDEQGMLNFLVKTLAPRCHFVMSASSAEDGAQWLRGHHVDLVIL-DISLPGKSGVV 80

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
            L  +  Q     VILIT   D+  A++A+  GA DFI KPF   ++++ V    E+ RL
Sbjct: 81  WLKELREQGFTGEVILITAFADLDTAIEALRAGASDFILKPFRVPQILNAVKHCYERSRL 140

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
             EN  L+R++  S      ++G ++A+Q LR++IA+VA   + +LL GE+GTGKELVAR
Sbjct: 141 RRENFVLRRAVVTSAPGRAALVGGSSAMQQLRESIARVAPVNSTVLLQGESGTGKELVAR 200

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            LH  SSR    FV +NC AV   LIESEL+GH KGAF+GA   R G F +AQGGTLFLD
Sbjct: 201 ELHALSSRAGGPFVPVNCAAVSPELIESELFGHAKGAFSGATRARDGLFHYAQGGTLFLD 260

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EI  +P+  Q  LLR +++  I  +GS +L+PL++R++AAT   L +  A G+FR+DLY+
Sbjct: 261 EIAELPLSIQATLLRAIEDLNIRPVGSEQLVPLNLRIVAATNRQLSEEVAAGRFRKDLYF 320

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RL +V L +PPLRE +EDI  L  HF+   A   G    A++  ++  L  +DWPGNVRE
Sbjct: 321 RLQVVDLALPPLREHKEDIAELVAHFIAQLAPSLGVEPLAISEHEMDFLRQYDWPGNVRE 380

Query: 364 LRNAAERYVLLGKL 377
           LRN  ER ++LG L
Sbjct: 381 LRNLLERSLILGNL 394