Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., sigma-54-dependent Fis family transcriptional regulator from Magnetospirillum magneticum AMB-1

 Score =  299 bits (766), Expect = 1e-85
 Identities = 174/466 (37%), Positives = 269/466 (57%), Gaps = 29/466 (6%)

Query: 3   DVFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPG--LS 60
           D+ ++DDE+DIR  +A   E    N +  A+ +EAL  I+A+  P +++ DI L G  L 
Sbjct: 4   DILIVDDEADIRALIAGILEDEGHNTREAANSDEALEGIRARR-PNLVIQDIWLQGSRLD 62

Query: 61  GQNLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEK 120
           G  +L ++   + E+PV++I+GHG+I  AV+A+  GAYDFIEKPF  +RL+  V RA+E 
Sbjct: 63  GLEVLDAIKRDNPEVPVVMISGHGNIETAVQAIKQGAYDFIEKPFKADRLLLVVERAVEA 122

Query: 121 RRLTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKEL 180
            RL  EN +L+    +    G  ++G    I  +R  + +V  T + +L+ G  G+GKE+
Sbjct: 123 ARLRRENEELR----LRSGSGGELVGNAVGILQVRQAVEKVGPTNSRVLITGPAGSGKEV 178

Query: 181 VARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADS-RRVGKFEHAQGGT 239
           VAR +H +S R +  FV +NC A+  + +E EL+G E G   G DS R+VG FE A GGT
Sbjct: 179 VARQIHARSRRADGPFVVLNCAAMHPDRMEMELFGTEHG-LDGPDSPRKVGTFEQAHGGT 237

Query: 240 LFLDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQ 299
           L LDE+  MP++ Q +++RVLQ+++ ERIG  + + +D+RVIA+T  DL+     G FR+
Sbjct: 238 LLLDEVADMPLETQGKIVRVLQDQMFERIGGGKRVEVDVRVIASTNRDLQSEMTAGHFRE 297

Query: 300 DLYYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPG 359
           DLYYRLN+V + +P LR+RREDIP L  HF+ +AAA  G     +    + +L ++DWPG
Sbjct: 298 DLYYRLNVVPVKMPSLRDRREDIPLLARHFMTMAAAAAGVQPRMVGEDAMAALQAYDWPG 357

Query: 360 NVRELRNAAERYVL------------------LGKLAQFAESHEPKSKL--LGLNEQVAE 399
           NVR+LRN  +  ++                  +G +       E  S++  L L E    
Sbjct: 358 NVRQLRNVMDWLLIMAPGDQREAIRADMLPGEIGAITPAVLRWEKSSEIMTLPLREAREL 417

Query: 400 FEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQKYQLDKESYK 445
           FE+  L   +    G+I  T   + + R  L+ K++   ++ +  K
Sbjct: 418 FEREYLLAQVNRFAGNISRTAAFVGMERSALHRKLKLLGVNTDEKK 463