Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., Nitrogen regulation protein NR(I) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  297 bits (760), Expect = 6e-85
 Identities = 163/365 (44%), Positives = 231/365 (63%), Gaps = 10/365 (2%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V+++DD+S IR  L ++   A L    F +  E L A+ A   P V++SDI +PG+ G  
Sbjct: 6   VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAAL-ASKTPDVLLSDIRMPGMDGLA 64

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL  +  +   LPVI++T H D+  AV A   GA+D++ KPF  +  +  V RAI     
Sbjct: 65  LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH--- 121

Query: 124 TLENRQLKRSLKVSQTLGPR--IIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELV 181
             + +Q  R+++V+   GP   +IGE  A+Q +   I +++ +   +L+ GE+GTGKELV
Sbjct: 122 -YQEQQQPRNIEVN---GPTTDMIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177

Query: 182 ARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLF 241
           A +LH  S R +  F+A+N  A+P++LIESEL+GHEKGAFTGA++ R G+FE A GGTLF
Sbjct: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237

Query: 242 LDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDL 301
           LDEI  MP+  Q RLLRVL +    R+G    + +D+R+IAAT  +L++   EGKFR+DL
Sbjct: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLERRVQEGKFREDL 297

Query: 302 YYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNV 361
           ++RLN++ + +PPLRERREDIP L  HFL VAA   G  A  L      +L    WPGNV
Sbjct: 298 FHRLNVIRIHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETETALTRLAWPGNV 357

Query: 362 RELRN 366
           R+L N
Sbjct: 358 RQLEN 362