Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein (NCBI) from Escherichia coli BW25113

 Score =  293 bits (750), Expect = 7e-84
 Identities = 170/442 (38%), Positives = 253/442 (57%), Gaps = 15/442 (3%)

Query: 3   DVFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQ 62
           D+ ++DD+      L         N     S  +AL  ++ Q   LV+  D+ +  + G 
Sbjct: 7   DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLC-DVRMAEMDGI 65

Query: 63  NLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRR 122
             L  +   +  +PV+++T +  +  AV+A+  GA D++ KP       D +   +EK  
Sbjct: 66  ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLD----FDNLQATLEKAL 121

Query: 123 LTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVA 182
               +   +     +   G  ++G++ A+Q L   IA VA ++A +L+ G++GTGKELVA
Sbjct: 122 AHTHSIDAETPAVTASQFG--MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179

Query: 183 RSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFL 242
           R++H  S+R E+  V +NC A+ E+L+ESEL+GHEKGAFTGAD RR G+F  A GGTLFL
Sbjct: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239

Query: 243 DEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLY 302
           DEI  +    Q+RLLR +QER ++R+GSN++I +D+R+IAAT  DL      G+FRQDLY
Sbjct: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299

Query: 303 YRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVR 362
           YRLN+V + +P LR+RREDIP L  HFL   A R  KA    T   +  L+ +DWPGN+R
Sbjct: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359

Query: 363 ELRNAAERYVLLGKLAQFAESHEPKSKL-----LGLNEQV---AEFEKSLLEQTLIECGG 414
           EL NA ER V+L      +E   P +       LG ++ +    E EK ++   L + GG
Sbjct: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGG 419

Query: 415 SIKATMERLHLPRKTLYDKMQK 436
           +      +L + RKTL  K+ +
Sbjct: 420 NKTEAARQLGITRKTLLAKLSR 441