Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., nitrogen regulation protein NR(I) from Erwinia tracheiphila SCR3

 Score =  290 bits (743), Expect = 5e-83
 Identities = 186/472 (39%), Positives = 262/472 (55%), Gaps = 43/472 (9%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V+++DD++ IR  L ++   A L+   F S  E L A+ A   P V++SDI +PG+ G  
Sbjct: 6   VWIVDDDNSIRWVLERALTGAGLSCATFDSGNEVLDAL-ATKTPDVLLSDIRMPGMDGLV 64

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL  +  +   LPVI++T H D+  AV A   GA+D++ KPF  +  +  V RAI   R 
Sbjct: 65  LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYR- 123

Query: 124 TLENRQLKRSLKVSQTLGPR--IIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELV 181
               +Q  R+  VS   GP   IIGE  A+Q +   I +++ +   +L+ GE+GTGKELV
Sbjct: 124 ---EQQQPRNQPVS---GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 177

Query: 182 ARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLF 241
           A +LH  S R +  F+A+N  A+P++LIESEL+GHEKGAFTGA+  R G+FE A GGTLF
Sbjct: 178 AHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANQIRQGRFEQADGGTLF 237

Query: 242 LDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDL 301
           LDEI  MP+  Q RLLRVL +    R+G    + +D+R+IAAT  +L+    EGKFR+DL
Sbjct: 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLELRVQEGKFREDL 297

Query: 302 YYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNV 361
           ++RLN++ + +PPLRERREDIP L  +FL VAA   G  A  L      +L    W GNV
Sbjct: 298 FHRLNVIRVHLPPLRERREDIPRLARYFLQVAARELGVEAKILHPETETALTRLRWSGNV 357

Query: 362 RELRN--------AAERYVLL----GKLAQFAESHEPKSKLLG----------------- 392
           R+L N        AA + VL+    G+L + A    P   L                   
Sbjct: 358 RQLENTCRWLTVMAAGQEVLIQDLPGELFEAATQETPGHSLPDSWATLLAQWADHALRSG 417

Query: 393 ----LNEQVAEFEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQKYQLD 440
               L+E   E E++LL   L    G  +     L   R TL  K+++  ++
Sbjct: 418 HENLLSETQPEMERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469