Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., nitrogen regulation protein NR(I) from Enterobacter asburiae PDN3

 Score =  297 bits (761), Expect = 4e-85
 Identities = 187/471 (39%), Positives = 266/471 (56%), Gaps = 40/471 (8%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V+++DD+S IR  L ++   A L+   F S  E L A+  +  P V++SDI +PG+ G  
Sbjct: 6   VWVVDDDSSIRWVLERALTGAGLSCTTFESGSEVLDALTTK-TPDVLLSDIRMPGMDGLA 64

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL  +  +   LPVI++T H D+  AV A   GA+D++ KPF  +  +  V RAI   + 
Sbjct: 65  LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ- 123

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
             E +Q + +     T    IIGE  A+Q +   I +++ +   +L+ GE+GTGKELVA 
Sbjct: 124 --EQQQPRHAPDFGPTTD--IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
           +LH  S R +  F+A+N  A+P++LIESEL+GHEKGAFTGA++ R G+FE A GGTLFLD
Sbjct: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EI  MP+  Q RLLRVL +    R+G    + +D+R+IAAT  +L+Q   EGKFR+DL++
Sbjct: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN++ + +PPLRERREDIP L  HFL VAA   G  A  L      +L    WPGNVR+
Sbjct: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKQLHPETDAALTRLAWPGNVRQ 359

Query: 364 LRN--------AAERYVLLGKL-AQFAESHEPKSK-----------LLG----------- 392
           L N        AA + VL+  L A+  E+  P+S            LL            
Sbjct: 360 LENTCRWLTVMAAGQEVLIQDLPAELFEATAPESSTGHALPDSWATLLAQWADRALRSGH 419

Query: 393 ---LNEQVAEFEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQKYQLD 440
              L+E   E E++LL   L    G  +     L   R TL  K+++  ++
Sbjct: 420 QNLLSEAQPEMERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 470