Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., C4-dicarboxylate transport transcriptional regulatory protein DctD from Escherichia fergusonii Becca

 Score =  429 bits (1102), Expect = e-124
 Identities = 225/443 (50%), Positives = 301/443 (67%), Gaps = 4/443 (0%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           +  I+D  D+R A  Q+  LA          E ++  I++Q   ++I++D+ LPG+SG  
Sbjct: 10  IVYIEDSDDVRFACEQTLTLAGYRVISCCDAEHSIPLIQSQA-NIIILTDVRLPGISGLE 68

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LLS +   DS++PVILITGHGD+ MAV AM +GA+DFIEKP + ++L+  + RA+EKRRL
Sbjct: 69  LLSYINEMDSKIPVILITGHGDVEMAVDAMRNGAFDFIEKPSSSDKLLSIIARAVEKRRL 128

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
            LEN+QL  +L+  Q  GP +IG +  +Q LR  I  VADT AD+L++GETG GKE+VAR
Sbjct: 129 VLENQQLLANLQ--QENGPVLIGRSPQMQQLRKMILNVADTGADVLIYGETGCGKEVVAR 186

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            LH  S+RR+  FVA+NC  +PE L ESE++GHE GAFTGA  +R+GK EHA GGTLFLD
Sbjct: 187 MLHHWSTRRQGQFVALNCAGLPETLFESEIFGHEAGAFTGAVKKRIGKIEHANGGTLFLD 246

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EIE MP   Q++LLRVLQER IER+G+N+LIP++ RVIAATK DL + + E  FR DLYY
Sbjct: 247 EIEGMPSGMQVKLLRVLQERTIERLGANQLIPVNCRVIAATKEDLLRRSEEHLFRLDLYY 306

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN+V+L IPPLR+RREDIP LF+ F   AA +Y +    ++   +  L S  WPGNVRE
Sbjct: 307 RLNVVSLNIPPLRQRREDIPELFYWFASQAAQKYNRPLPDISPMLLAWLQSQSWPGNVRE 366

Query: 364 LRNAAERYVLLGKLAQFAESHEPKSKLLGLNEQVAEFEKSLLEQTLIECGGSIKATMERL 423
           L++ AER+V LG L         + +  GL   +  FEK L+E  L +  G +  T   L
Sbjct: 367 LKHNAERFV-LGLLTHHQPVPMTQQEESGLTACIDAFEKKLIEDMLRQTEGQVSLTARLL 425

Query: 424 HLPRKTLYDKMQKYQLDKESYKP 446
            LPRKTLYDK+ K+Q+  + Y+P
Sbjct: 426 QLPRKTLYDKLNKHQIQPQVYRP 448