Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., nitrogen regulation protein NR(I) from Dickeya dianthicola ME23

 Score =  291 bits (744), Expect = 4e-83
 Identities = 162/365 (44%), Positives = 226/365 (61%), Gaps = 9/365 (2%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V+++DD+S IR  L ++   A L    F +  +AL A+  Q  P V++SDI +PG+ G  
Sbjct: 6   VWIVDDDSSIRWVLERALTGAGLTCATFDNGTQALNALTTQ-TPDVLLSDIRMPGMDGLA 64

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL  +  +   LPVI++T H D+  AV A   GA+D++ KPF  +  +  V RAI     
Sbjct: 65  LLQQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY-- 122

Query: 124 TLENRQLKRSLKVSQTLGPR--IIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELV 181
            +E +Q  RS  +S   GP   IIGE  A+Q +   I +++ +   +L+ GE+GTGKELV
Sbjct: 123 -MEQQQPARSQPIS---GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELV 178

Query: 182 ARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLF 241
           A +LH  S R +  F+A+N  A+P++LIESEL+GHEKGAFTGA+  R G+FE A GGTLF
Sbjct: 179 AHALHRHSPRTKAPFIALNMAAIPKDLIESELFGHEKGAFTGANQIRQGRFEQADGGTLF 238

Query: 242 LDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDL 301
           LDEI  MP+  Q RLLRVL +    R+G    + +D+R+IAAT  +L+    EGKFR+DL
Sbjct: 239 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAAVKVDVRIIAATHQNLELRVQEGKFREDL 298

Query: 302 YYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNV 361
           ++RLN++ + +PPLRERREDIP L  +FL   A   G     L      +L    WPGNV
Sbjct: 299 FHRLNVIRVHLPPLRERREDIPRLARYFLQATARELGVEPKNLHPETEAALTRLPWPGNV 358

Query: 362 RELRN 366
           R+L N
Sbjct: 359 RQLEN 363