Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein from Escherichia coli BL21

 Score =  300 bits (769), Expect = 5e-86
 Identities = 172/453 (37%), Positives = 263/453 (58%), Gaps = 18/453 (3%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           + ++DDE ++R  L+ +F L        A+     L + A   P V++ DI +P + G  
Sbjct: 7   ILIVDDEDNVRRMLSTAFALQGFETHC-ANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
            L  +   ++  PVIL+T + ++  AV+A+  GA+D++ KPF  + L   V RA++ + +
Sbjct: 66  ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSM 125

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
             E R L ++L  S   G  +    A +   +DT A++A +QA +L+ GE+GTGKEL+AR
Sbjct: 126 KKEIRHLHQALSTSWQWGHILTNSPAMMDICKDT-AKIALSQASVLISGESGTGKELIAR 184

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
           ++H  S R +  F+ +NC A+PE+L+ESEL+GHEKGAFTGA + R G FE A  GTL LD
Sbjct: 185 AIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLD 244

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EI  MP+  Q +LLR+LQER  ERIG ++ I +DIR+IAAT  DL+    EG FR+DL+Y
Sbjct: 245 EIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY 304

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN++ L +PPLR+RREDI  L +HFL   ++   +    +    +  L +  WPGN+RE
Sbjct: 305 RLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRE 364

Query: 364 LRNAAERYVLLGK-------------LAQFAESHEPKSKLLG---LNEQVAEFEKSLLEQ 407
           L N  ER V++                     + E K+  +G   L E++   EK ++ +
Sbjct: 365 LSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIME 424

Query: 408 TLIECGGSIKATMERLHLPRKTLYDKMQKYQLD 440
            L +  G+   T   L + R+ L  K+Q+Y +D
Sbjct: 425 VLEQQEGNRTRTALMLGISRRALMYKLQEYGID 457