Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., C4-dicarboxylate transport transcriptional regulatory protein DctD from Azospirillum sp. SherDot2

 Score =  436 bits (1121), Expect = e-127
 Identities = 232/449 (51%), Positives = 304/449 (67%), Gaps = 11/449 (2%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V LIDD+ ++  +  Q+ EL     +     E  L  + A   P V+V+D+ +PG+ G  
Sbjct: 3   VLLIDDDPEVLDSSRQTLELEGFAVEAVTEPEAGLARLGASW-PGVVVTDVRMPGMDGFA 61

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL  V   D+E+PV+L+TGHGDI+MA++A+ +GAYDFIEKP  P+ L++ V RA+  R L
Sbjct: 62  LLERVRAADAEVPVVLVTGHGDIAMAMRAVREGAYDFIEKPAEPDHLVEVVRRALAHRGL 121

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
            LENR+L+  L      G RIIG +  I+ LR  +A +AD + D+LLFGETGTGKELVAR
Sbjct: 122 VLENRRLRAQLAEGGPKG-RIIGRSPVIEHLRAAVANLADAEVDVLLFGETGTGKELVAR 180

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
           SLHE   RR  NFVA+NCGA+P+ +IESEL+GHE GAFTGA +RR+GK E+A GGTLFLD
Sbjct: 181 SLHEGGRRRAGNFVALNCGAMPDTIIESELFGHEPGAFTGAQARRIGKLEYAAGGTLFLD 240

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EIESMPM  Q++LLRVLQER IERIG N  IPLD+RV+AATK+DL + AAEGKFR+DLYY
Sbjct: 241 EIESMPMHLQVKLLRVLQERAIERIGGNRTIPLDLRVVAATKVDLLRLAAEGKFREDLYY 300

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN+VT+ +PPLRERR D+  LF HFL  A AR  +    L  + +  L +H WPGNVRE
Sbjct: 301 RLNVVTVPLPPLRERRGDVALLFRHFLDAALARSRRTPPPLDPALLARLAAHGWPGNVRE 360

Query: 364 LRNAAERYVL--------LGKLAQFAESHEPKSKLLGLNEQVAEFEKSLLEQTLIECGGS 415
           LRN AER  L        +G  A  A      +++  L +++   EK L+E  L  CGG 
Sbjct: 361 LRNVAERVALGLGDGLAPVGVTAGTA-GMAGSAEIEPLADRLDRVEKQLIEDALARCGGR 419

Query: 416 IKATMERLHLPRKTLYDKMQKYQLDKESY 444
           +  T E+L + RKTLY KM+ + L ++ +
Sbjct: 420 VGETAEQLGITRKTLYLKMRHHGLSRDDF 448