Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., Regulatory protein AtoC from Azospirillum sp. SherDot2

 Score =  313 bits (801), Expect = 1e-89
 Identities = 182/440 (41%), Positives = 257/440 (58%), Gaps = 7/440 (1%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V ++DDE  IR  L++S E          S E+A L ++   + L+I+ DI LPG SG +
Sbjct: 28  VLIVDDEEGIRNFLSRSLERRGWRVTTTGSAEDAALHLERHCVDLIIL-DIALPGQSGLD 86

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
            L  +        VILIT   DI  A++A+  GA D I KPF  E+++  + R +E+ RL
Sbjct: 87  WLKELQAAGFGGDVILITAFADIDTAIEALRAGAADLILKPFRVEQIVSAIARCMERTRL 146

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
             EN  L+R L   +     I+G +AAI  LR  I +VA + + +L+ GE+G GKELVAR
Sbjct: 147 QRENFVLRRQLAKRRGTTDEIVGRSAAILRLRALIERVAPSPSTVLIEGESGVGKELVAR 206

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
           +LH +S R E+ FVA+NC AV  +L+E+EL+GH +GAFTGA   R G F +A GGTLFLD
Sbjct: 207 ALHTRSHRAERPFVALNCAAVSADLVEAELFGHLRGAFTGAKEARKGLFYYAHGGTLFLD 266

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EI  +P+  Q +LLRVL+ER I  +G  + +P+D+RV+AAT  DLK   A G+FR DL+Y
Sbjct: 267 EIGELPLALQSKLLRVLEERRIRPVGGEQELPVDVRVVAATNRDLKAEVAAGRFRADLFY 326

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RL ++TL +PPLRER +D+  L   F+ V + R G     +      +L++H WPGNVRE
Sbjct: 327 RLAVMTLRVPPLRERGDDVVELARRFMGVLSLRLGVPPLDIDPPLEAALIAHGWPGNVRE 386

Query: 364 LRNAAERYVLLGKL------AQFAESHEPKSKLLGLNEQVAEFEKSLLEQTLIECGGSIK 417
           LRN  ER +L G+            + E         + +AE EK  +   L +CGG+  
Sbjct: 387 LRNLVERALLFGEFPLEDLGLSVCVAPEGAGADAAGGQTLAEVEKRHILAVLADCGGNRA 446

Query: 418 ATMERLHLPRKTLYDKMQKY 437
                L + RKTL  K  ++
Sbjct: 447 RAAALLGVSRKTLDRKWAEW 466