Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., Regulatory protein AtoC from Azospirillum sp. SherDot2

 Score =  303 bits (775), Expect = 1e-86
 Identities = 182/457 (39%), Positives = 263/457 (57%), Gaps = 25/457 (5%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V ++DD+  IR  LA       L+    A   EA+ A  AQ   +V++ D+ +P ++G  
Sbjct: 16  VLVVDDDEAIREMLAAVLTRDGLSVTTAADGVEAVAAFAAQRHAVVLM-DVRMPRMTGLQ 74

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
            L+ +   D    VIL+T + ++  AV+A+ DGA+D++ KPF    ++  V RA++ RR+
Sbjct: 75  ALAEIRKLDRSTAVILMTAYAEVGAAVQAIKDGAFDYVIKPFDIAEILLQVGRALQMRRM 134

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
             +   L R L  S     RI+  +  +  L  TIA+VA + A +L+ GE+GTGKELVA 
Sbjct: 135 RDDIATLHRELSSSYRTD-RILTASPRMSELLQTIAKVAKSNATVLVTGESGTGKELVAA 193

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
           ++H  S R    FV +NC AVPE L+ESE +GHE+GAFTGA +RR G+FE A+ GTLFLD
Sbjct: 194 AIHYNSPRNAGPFVKVNCAAVPEGLLESEFFGHERGAFTGAQARRRGRFEQAEHGTLFLD 253

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EI  +    Q++LLRVLQER  ER+G  EL+  D+RVI AT  +L++   +G FRQDLY+
Sbjct: 254 EIGDISPSLQVKLLRVLQEREFERVGGAELVRTDVRVIVATNRNLEEMVRQGLFRQDLYF 313

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN+VTL   PLRER ED+  L  HFL   AA      + +    ++ LL++ WPGN+RE
Sbjct: 314 RLNVVTLRTVPLRERPEDVRLLASHFLQRFAAENRIDVSGIDEQAMERLLAYRWPGNIRE 373

Query: 364 LRNAAERYVLLG------------KLAQFAESHEP-----------KSKLLGLNEQVAEF 400
           L NA ER V++             ++A  A   EP            S    L EQV+ F
Sbjct: 374 LSNAMERAVVMSTGAMIVTEDLPEQIAGRAGDSEPATDTDSDGAAAPSAAGSLREQVSRF 433

Query: 401 EKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQKY 437
           E  ++   L    G+   T ++L + R++L  K+Q+Y
Sbjct: 434 EARVVADALARNDGNRMKTAQQLGISRRSLLYKLQEY 470