Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., Nitrogen regulation protein NR(I) from Alteromonas macleodii MIT1002

 Score =  296 bits (759), Expect = 7e-85
 Identities = 176/465 (37%), Positives = 262/465 (56%), Gaps = 37/465 (7%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V+++DD+S IR  L ++ + AD++   F + E+ LL +++   P VI+SDI +P + G  
Sbjct: 6   VWIVDDDSSIRWVLQKALQAADISCLSFENPEDLLLQLQSGQAPEVIISDIRMPQMDGMT 65

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL+ V      LPVI++T H D+  AV A   GA++++ KPF  +  +    RA+   R 
Sbjct: 66  LLNEVHASHPMLPVIIMTAHSDLDSAVNAYQKGAFEYLPKPFDIDEAVTLTQRALAHAR- 124

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
                Q   S    + +   IIGE  A+Q +   I +++ +   +L+ G++GTGKELVA 
Sbjct: 125 ----EQSTVSKAQVEDVVTEIIGEAPAMQEVFRAIGRLSRSSISVLINGQSGTGKELVAH 180

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
           +LH  S R  + F+A+N  A+P +L+ESEL+GHEKGAFTGA + R G+FE A GGTLFLD
Sbjct: 181 ALHRHSPRASKPFIALNMAAIPADLVESELFGHEKGAFTGAQAARQGRFEQADGGTLFLD 240

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EI  MP+  Q RLLRVL +    R+G ++ + +D+R+IAAT  +L+Q  AEGKFR+DL++
Sbjct: 241 EIGDMPLDVQTRLLRVLADGQFYRVGGHQSVSVDVRIIAATHQNLEQRVAEGKFREDLFH 300

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN++ + +P L ERREDIP L  HFL  AA      A +++    + +    WPGNVR+
Sbjct: 301 RLNVIRVHLPSLNERREDIPLLTRHFLRRAAKELDVEAKSISKDAERVMSQLPWPGNVRQ 360

Query: 364 LRN--------AAERYVLLGKL-----------AQFAESHEPKSKLLG------------ 392
           L N        A+ + VL   L              AES E    L              
Sbjct: 361 LENVCRWLTVMASGQEVLPSDLPPEIHSDSSIEKPSAESGEWPDLLASWTDKQLRDGHHN 420

Query: 393 -LNEQVAEFEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQK 436
            LN+ +  FE+ +LE+ L    G  +   +RL   R TL  K+++
Sbjct: 421 ILNDAMLTFERIMLERALQHTHGHKQDAAKRLGWGRNTLTRKLKE 465