Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 453 a.a., Transcriptional regulatory protein ZraR from Alteromonas macleodii MIT1002

 Score =  294 bits (753), Expect = 3e-84
 Identities = 176/453 (38%), Positives = 255/453 (56%), Gaps = 19/453 (4%)

Query: 1   MCDVFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLP--- 57
           M D  L+ D+ D+ I     + L D N   FA    + +A   +  P V+  D+ LP   
Sbjct: 1   MTDTILVVDD-DLGIQKQLKWSLTDYNV-VFADDHTSAIAQLRRFEPKVVTLDLGLPPDP 58

Query: 58  --GLSGQNLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVH 115
                G  +L  ++       VI++TG+ D   A+KA+  GAYDF +KP   + +   VH
Sbjct: 59  ANASEGLRILHDIIALAPRTKVIVVTGNNDKQHALKAIDFGAYDFYQKPIDSDTIKLLVH 118

Query: 116 RAIEKRRLTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETG 175
           RA+   +L  EN  L R+         RI+G + AIQ +     ++A+T    LL GE+G
Sbjct: 119 RALNLSKLEHENSILARTRSGMS----RIVGNSEAIQKVVRRAEKIANTDISTLLLGESG 174

Query: 176 TGKELVARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHA 235
           TGKE+ ARS+HE S R+++ FVAINC ++PENL+ESEL+G+EKGAFTGA+   VGK E A
Sbjct: 175 TGKEVFARSIHEHSPRKDKPFVAINCASIPENLLESELFGYEKGAFTGANKTTVGKIETA 234

Query: 236 QGGTLFLDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEG 295
           QGGTLFLDEI  MP+  Q ++LR LQERVIER+G    IP+DIRVI AT  DL+   A+ 
Sbjct: 235 QGGTLFLDEIGDMPIGLQAKMLRFLQERVIERVGGRNEIPVDIRVICATHRDLQAMVAQE 294

Query: 296 KFRQDLYYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSH 355
            FR+DLYYR+  + + IPPLRER +DI  L   FL +    +   A + + + V ++L+H
Sbjct: 295 TFREDLYYRVGEMPIMIPPLRERDQDIILLARTFLNIYREEFKAKAKSFSETAVNAMLAH 354

Query: 356 DWPGNVRELRNAAERYVLLGK--------LAQFAESHEPKSKLLGLNEQVAEFEKSLLEQ 407
            WPGN+RE++N  +  V++ +        L         + + L L E     E   + +
Sbjct: 355 KWPGNIREMQNKLKSAVIMAEGTVIQPDDLGLMPVDAHDEPETLNLREVREIAESRAIRR 414

Query: 408 TLIECGGSIKATMERLHLPRKTLYDKMQKYQLD 440
              +   ++  T E L + R TLY  + KY ++
Sbjct: 415 AYQKADKNMSKTAELLGVTRPTLYSLIDKYHME 447