Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., two component response regulator for C4-dicarboxylate transport from Agrobacterium fabrum C58

 Score =  428 bits (1101), Expect = e-124
 Identities = 220/445 (49%), Positives = 310/445 (69%), Gaps = 7/445 (1%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           +FL+DD+S +R A+ Q+ EL  L    F+  E+AL A+  +    +I++D+ +PG++G  
Sbjct: 7   IFLVDDDSQLRKAMVQTLELDGLPVTSFSRAEQALAALN-EDFDGIIITDVRMPGMTGLE 65

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
               V   D++LPVILITGHGD+ MAV A+H+GAYDFI KPF  ER++++  RA+EKRRL
Sbjct: 66  FFDHVRKIDADLPVILITGHGDVPMAVDALHNGAYDFIAKPFPAERMVESARRALEKRRL 125

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
            LENR L+R+   ++   P +IG+T A++ LR T+  +ADT  D+L+ GETG+GKE+VA 
Sbjct: 126 VLENRALRRAAGQAEDDLP-LIGQTPAMERLRTTLRHIADTDVDVLVAGETGSGKEVVAT 184

Query: 184 SLHEQSSRREQ-NFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFL 242
           +LH  S +R + NFVA+NCGA+PE +IESEL+GHE GAFTGA  +RVG+ EH+ GGTLFL
Sbjct: 185 ALHRWSKKRSKGNFVALNCGALPETVIESELFGHEPGAFTGAQKKRVGRIEHSSGGTLFL 244

Query: 243 DEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLY 302
           DEIESMP+  Q+++LRVL+ R +  +GSNE  P+DIRV+AA K+DL   A  G FR+DLY
Sbjct: 245 DEIESMPLAVQVKMLRVLEMREVSPLGSNEERPVDIRVVAAAKVDLGDPAERGTFREDLY 304

Query: 303 YRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVR 362
           YRLN+VTL+IPPLRER+ DIP LF HF+  AA R+      ++A   + L  HDWPGNVR
Sbjct: 305 YRLNVVTLSIPPLRERKADIPLLFSHFVTKAANRFNMPVPQISAGTSRRLQDHDWPGNVR 364

Query: 363 ELRNAAERYVLLGKLAQFAESHEPKSKLLG---LNEQVAEFEKSLLEQTLIECGGSIKAT 419
           EL + AER V+LG  A+ A +   +S +     L E++ E E  ++ +TL    G +  T
Sbjct: 365 ELGHFAER-VVLGLEAEPAAAPTSQSAIPASGTLPERMDEIEAHIIRETLERSNGDVAET 423

Query: 420 MERLHLPRKTLYDKMQKYQLDKESY 444
           +  L + RKT YDK+Q++ +++  Y
Sbjct: 424 IATLGIARKTFYDKLQRHGINRADY 448