Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., two component response regulator from Agrobacterium fabrum C58

 Score =  402 bits (1032), Expect = e-116
 Identities = 220/442 (49%), Positives = 283/442 (64%), Gaps = 2/442 (0%)

Query: 1   MCDVFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLS 60
           M  V LIDDE ++R + AQ+ EL+       AS E AL  I       V+VSDI +PG+ 
Sbjct: 3   MSRVLLIDDEEELRFSTAQALELSGFAVTMLASAEHALELI-GYSFDGVVVSDIRMPGMD 61

Query: 61  GQNLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEK 120
           G  LL  V   D E+PVIL+TGHGD+ +AV AM +GAYDFIEKPF P+ L   + RA ++
Sbjct: 62  GMTLLQKVRELDPEIPVILMTGHGDVQLAVNAMRNGAYDFIEKPFTPQYLAGIIKRANDR 121

Query: 121 RRLTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKEL 180
           R L LENR+LK        L  R+ G T  +  LR  I  +  T AD L+ G+TG GKE+
Sbjct: 122 RALVLENRRLKAVAGKHDDLETRLPGRTQVMVDLRYRIRAIGATDADTLIVGDTGAGKEV 181

Query: 181 VARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTL 240
           VAR+LH+ S+R  + FVAINC A+P+ LIESEL+GHE GAF GA   R GKFEHA+GGT+
Sbjct: 182 VARALHDISARANRPFVAINCAALPQTLIESELFGHEAGAFPGALRSRYGKFEHARGGTI 241

Query: 241 FLDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQD 300
            LDEI SMP + Q R LRVLQERVI R+GSNE + LD+R IA +K+DL+Q  A G+FR D
Sbjct: 242 LLDEIGSMPFELQGRFLRVLQERVITRLGSNETVELDVRFIATSKVDLEQEVAAGRFRAD 301

Query: 301 LYYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGN 360
           L YRLN+ TL +P L +R  DIP LF H +  AAARYG+    +    + ++   +WPGN
Sbjct: 302 LLYRLNVATLLVPSLSQRSADIPLLFLHLVREAAARYGREDMDVPQHLLSAVSLREWPGN 361

Query: 361 VRELRNAAERYVL-LGKLAQFAESHEPKSKLLGLNEQVAEFEKSLLEQTLIECGGSIKAT 419
           VRELRNAA+R+VL L                  L  +VA +EKSL+   +   GG++K+ 
Sbjct: 362 VRELRNAADRFVLGLESDVSEVSLALDDDGTSTLAPRVAAYEKSLIAHAIAVHGGNLKSV 421

Query: 420 MERLHLPRKTLYDKMQKYQLDK 441
            E L + RKTLY+KMQKY L +
Sbjct: 422 YESLGISRKTLYEKMQKYGLHR 443