Pairwise Alignments

Query, 597 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 650 a.a., Two-component system sensor histidine kinase from Variovorax sp. SCN45

 Score =  246 bits (629), Expect = 2e-69
 Identities = 180/603 (29%), Positives = 298/603 (49%), Gaps = 41/603 (6%)

Query: 3   SIRRLSLMLWVMFIVLVSMSTHLYWRFQYQA----LLNEHQSQLDRFSSHIVATLDKYAH 58
           SIR   L  W   + LV+++     +   Q     L      +LD  ++ + A L ++ +
Sbjct: 46  SIRWRGLPRWCAALALVAVAAFAGHQVAMQTGLARLREAADHRLDMLATGLDADLARFDY 105

Query: 59  IPHLISKDKELVDALLSAQNSAQI-DITNRYLEQVNEVIQAADTYLIDRFGNTIASSNWN 117
           +P L+     +V ALL   + A + D  NRYL+ VN    A   Y++DR G + A+S+W+
Sbjct: 106 LPALLEMTP-IVPALLDTPSDAHLRDAVNRYLDGVNATAGAEMLYVLDRSGISQAASDWD 164

Query: 118 LDRSFIGRNFAWRPYFYLSIAGQKSQYFALGSTSGQRGYYYAYPVIYAAEILGVIVVKMD 177
              + +G++ ++RPY   ++   + +++ +G TS + GYY +Y +       GV+ VK++
Sbjct: 165 KPGTTLGQDLSFRPYMIDALNHGRGRFYGVGITSKRPGYYLSYALRRGQPTRGVVAVKVN 224

Query: 178 LSAIEQGWQSKSSYFVATDDHQVVFMSSQPAWLFHSVADLSPAQLNDIRQSQQYLDSPIP 237
           L   E+ W+         D   VV +S++    F  +  L   Q  ++ +S+ Y ++ + 
Sbjct: 225 LEEAERAWRKLPGDVALIDQRGVVILSTREDLKFRPLLPLDALQRAEVLRSRPYGNAALQ 284

Query: 238 SLGWQGDLQAEQSEWRKPEKHWLQD-DYIVSSRPLPELALTIRVLSPKIELFWSAFGLVI 296
            L W      ++S  R  +   L D D + S+R L      + VL     +  +A    I
Sbjct: 285 PLQW----SQKESLDRNVQVITLDDTDQLASARTLGGAPWQLMVLDDLAPVRMAARNTAI 340

Query: 297 ILCMLFAIVYL-GFQLWHHRQ-LRQRQIEQLQ-QETKQKLEFEVMERTAKLHAEIAERIK 353
              +  A++ L    LW  R+ LRQ+   Q   Q     LE  V+ RTA+          
Sbjct: 341 TASLAMAVLLLVAVALWQRRRALRQKLANQAALQAAHDMLESTVVARTAQ---------- 390

Query: 354 TEHALRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEE 413
               LR  Q EL+ + K+A LGQMS  + HELN PL A+R+ +++    L  N+ +    
Sbjct: 391 ----LRAAQGELVHSGKMAALGQMSVGVVHELNQPLTAMRTLSESAGILLDKNRLDDVRG 446

Query: 414 NLSRISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILS-----AKELMTGQFKAQM 468
           NL RI  + +R+A+++ QLK+FA +S      D+ L PL+LS     A+ ++    K   
Sbjct: 447 NLQRICGMVDRLARLTSQLKTFAHRS------DLPLVPLLLSQAIADAQAMVAEAAKKHR 500

Query: 469 TLLELCDLETPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVD 528
             +E+      + V      L  VL+NL+ NA++A++    R +++  +  E ++ L + 
Sbjct: 501 VAIEVDVQPAALSVMAEEAALGSVLVNLMRNAVEAMQDAPLRTLRLVARLDEGRVILSLS 560

Query: 529 DNGPGVGIETLPHLFEPFHTTKK--NGLGLGLSISQQILHSMQGTLSVATSPLGGARFTI 586
           D GPG+  + LP LFEPF T+K    GLGLGL IS Q++ +M GTL  A    GGA F +
Sbjct: 561 DTGPGIRPDILPRLFEPFVTSKPAGAGLGLGLVISAQLVRAMDGTLRAANQAQGGACFVV 620

Query: 587 TLP 589
            LP
Sbjct: 621 DLP 623