Pairwise Alignments

Query, 426 a.a., ATP-dependent Clp protease ATP-binding subunit ClpX from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., ATP-dependent protease ATP-binding subunit HslU from Pseudomonas simiae WCS417

 Score = 97.4 bits (241), Expect = 8e-25
 Identities = 58/148 (39%), Positives = 89/148 (60%), Gaps = 16/148 (10%)

Query: 67  TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSG 126
           TPR+I   L+ ++IGQ+ AK+ +A+A+ N ++R++  +     VE+   NIL+IGPTG G
Sbjct: 4   TPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELR--VEVTPKNILMIGPTGVG 61

Query: 127 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVYID 186
           KT +A  LA+L + PF   +AT  TE GYVG DVE+II+        D+A A   ++   
Sbjct: 62  KTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIR--------DLADAALKLLREQ 113

Query: 187 EIDKISRKSENPSITRDVSGEGVQQALL 214
           E+ K+S ++E      D + E +  ALL
Sbjct: 114 EMTKVSHRAE------DAAEERILDALL 135



 Score = 85.5 bits (210), Expect = 3e-21
 Identities = 77/245 (31%), Positives = 108/245 (44%), Gaps = 62/245 (25%)

Query: 176 AKAERGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQ 235
           A  + GIV+IDEIDK++++  +  +  DVS EGVQ+ LL LIEG   +            
Sbjct: 244 AVEQHGIVFIDEIDKVAKRGNSGGV--DVSREGVQRDLLPLIEGCTVNT----------- 290

Query: 236 EFLQVDTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNSKTLSELFTQVEPE 295
           +   V T  ILFI  GAF                               LS+      P 
Sbjct: 291 KLGMVKTDHILFIASGAFH------------------------------LSK------PS 314

Query: 296 DLVKYGLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFRED 355
           DLV     PE  GRLP+   L  L      +IL EP  +LT+QY  L + E + +EF+ D
Sbjct: 315 DLV-----PELQGRLPIRVELKALTPGDFERILSEPHASLTEQYRELLKTEGLGIEFQAD 369

Query: 356 ALKAIA--AKAMKRKT---GARGLRSILEAVLLETMY---ELPSMEEVSKVVIDESVING 407
            +K +A  A  +  KT   GAR L ++LE +L E  +   +L   +    + ID   +N 
Sbjct: 370 GIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAGAQNGEVIKIDAEYVNS 429

Query: 408 ESAPL 412
               L
Sbjct: 430 HLGEL 434