Pairwise Alignments

Query, 426 a.a., ATP-dependent Clp protease ATP-binding subunit ClpX from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., ATP-dependent hsl protease ATP-binding subunit HslU from Variovorax sp. SCN45

 Score = 93.6 bits (231), Expect = 1e-23
 Identities = 47/103 (45%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 67  TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSG 126
           TP++I   LD++++GQ  AK+ +A+A+ N ++R +  D      E+   NIL+IGPTG G
Sbjct: 4   TPQEIVSELDNHIVGQPAAKRAVAIALRNRWRRQQVDDKLRH--EITPKNILMIGPTGVG 61

Query: 127 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 169
           KT +A  LARL D PF   +AT  TE GYVG+DV++II+ L +
Sbjct: 62  KTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIIRDLAE 104



 Score = 79.3 bits (194), Expect = 2e-19
 Identities = 88/332 (26%), Positives = 140/332 (42%), Gaps = 77/332 (23%)

Query: 98  KRLRNGDTTSEGVELG----KSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA 153
           K+LR      + +EL     ++ + ++GP G     + E   +L  +   M      T  
Sbjct: 160 KKLREHQLDDKEIELDLAETRTPLEIMGPAG-----MEEMTEQLRGMFGQMGQGKRKTRK 214

Query: 154 GYVGEDVENIIQKLLQKCDYD-------VAKAER-GIVYIDEIDKISRKSENPSITRDVS 205
             +GE +  ++ +   K   +       +  AE+ GIV+IDEIDK++ +SE      DVS
Sbjct: 215 LKIGEAMRLLVDEEAAKLVNEDEIRAQAITNAEQNGIVFIDEIDKVATRSEAQG--SDVS 272

Query: 206 GEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIEQRVA 265
            +GVQ+ LL L+EGT  +            ++  V T  +LFI  GAF            
Sbjct: 273 RQGVQRDLLPLVEGTAVTT-----------KYGVVRTDHMLFIASGAFH----------- 310

Query: 266 TGTGIGFGADVRSKDNSKTLSELFTQVEPEDLVKYGLIPEFIGRLPVTATLTELDEAALI 325
                              LS+      P DL     IPE  GR P+   L  L  +   
Sbjct: 311 -------------------LSK------PSDL-----IPELQGRFPIRVELQSLSVSDFE 340

Query: 326 QILCEPKNALTKQYAALFELENVDLEFREDALKAIAAKAMK-----RKTGARGLRSILEA 380
            IL + + +L KQY AL   E V L+F  + +  +A  A +        GAR L +++E 
Sbjct: 341 SILTQTRASLVKQYQALLATEGVTLDFTPEGVNRLATIAFEVNERTENIGARRLSTVMER 400

Query: 381 VLLETMYELPSMEEVSKVVIDESVINGESAPL 412
           +L E  ++   +E  S + ID + ++   A L
Sbjct: 401 LLDEVSFDATRLEGQS-IRIDAAYVDQRLAAL 431