Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 557 a.a., 30S ribosomal protein S1 from Rhodanobacter sp000427505 FW510-R12

 Score =  750 bits (1937), Expect = 0.0
 Identities = 366/527 (69%), Positives = 451/527 (85%), Gaps = 1/527 (0%)

Query: 1   MTESFAQLFEEFLNE-TQFQQGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQFKNAAGE 59
           MTESFA+LFE+     ++ + G IV G VV I N  V+++AGLKSE  +P EQFK+ +G 
Sbjct: 1   MTESFAELFEQSQQAISKLKPGAIVTGIVVEIRNDVVVINAGLKSEGIVPIEQFKSESGV 60

Query: 60  LEVQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGG 119
           LEVQVG +V VAL+A+EDGFGET+LSREKAKR   W  LE+A+++  T++G+I+GKVKGG
Sbjct: 61  LEVQVGDEVKVALEALEDGFGETKLSREKAKRSMVWDDLEQAFDKEETIVGMISGKVKGG 120

Query: 120 FTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESS 179
           FTV++  +RAFLPGSLVDVRP+RD  +LE KELEFK+IKLD+KRNNVVVSRRAV+E+E S
Sbjct: 121 FTVDIKDVRAFLPGSLVDVRPVRDPVYLEGKELEFKIIKLDRKRNNVVVSRRAVVETEFS 180

Query: 180 VERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGD 239
            ER++LLE L EG  VKG VKNLTDYGAFVDLGG+DGLLHITDMAWKRV+HPSE+VNVGD
Sbjct: 181 EEREKLLERLTEGAVVKGTVKNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVGD 240

Query: 240 EILVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEG 299
           E+ V+VLK+D++R RVSLGLKQLG+DPWVAIA+RYP G +L G+V+N+TDYGCFVEIE G
Sbjct: 241 ELDVRVLKYDKERNRVSLGLKQLGDDPWVAIARRYPVGSRLFGKVSNVTDYGCFVEIEPG 300

Query: 300 VEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAE 359
           VEGLVHVSEMDWTNKN++P+KVV VGDE EVMVLD+DEERRRISLG+KQ ++NPW++FA 
Sbjct: 301 VEGLVHVSEMDWTNKNVNPAKVVQVGDETEVMVLDVDEERRRISLGIKQTRSNPWEAFAA 360

Query: 360 AQAKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVV 419
              KGDKV+G+IKSITDFG+FIGL+GGIDGLVHLSDISW + GE+ VR FKKGDEI AVV
Sbjct: 361 MHKKGDKVSGQIKSITDFGVFIGLDGGIDGLVHLSDISWQMSGEDLVRNFKKGDEIEAVV 420

Query: 420 LAVDAERERISLGIKQMENDPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIR 479
           LAVD ERERISLGI+QME DPF  +++ N +G++V GTV  VDAKGA I+L +GVEGY+R
Sbjct: 421 LAVDPERERISLGIQQMEQDPFGQFMAANPRGSIVTGTVKEVDAKGAVIDLGEGVEGYLR 480

Query: 480 ASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIKAKDEAE 526
           A++++++RI+DA+  L VGDKVEAKFTG+DRK R + LSI+AKDE +
Sbjct: 481 ANDIAKERIDDATQHLKVGDKVEAKFTGMDRKGRQLALSIRAKDEED 527



 Score =  214 bits (546), Expect = 5e-60
 Identities = 124/363 (34%), Positives = 205/363 (56%), Gaps = 9/363 (2%)

Query: 175 ESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEI 234
           +++ S+  D+L +   +   + G++      G  VD+  V   L  + +  + V+ P  +
Sbjct: 89  KAKRSMVWDDLEQAFDKEETIVGMISGKVKGGFTVDIKDVRAFLPGSLVDVRPVRDP--V 146

Query: 235 VNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWVA----IAKRYPEGHKLSGRVTNLTDY 290
              G E+  K++K DR R  V +  + + E  +      + +R  EG  + G V NLTDY
Sbjct: 147 YLEGKELEFKIIKLDRKRNNVVVSRRAVVETEFSEEREKLLERLTEGAVVKGTVKNLTDY 206

Query: 291 GCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCK 350
           G FV++  G++GL+H+++M W     HPS+VVNVGDE++V VL  D+ER R+SLGLKQ  
Sbjct: 207 GAFVDLG-GIDGLLHITDMAWKRVR-HPSEVVNVGDELDVRVLKYDKERNRVSLGLKQLG 264

Query: 351 ANPWQSFAEAQAKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFK 410
            +PW + A     G ++ GK+ ++TD+G F+ +E G++GLVH+S++ W        +  +
Sbjct: 265 DDPWVAIARRYPVGSRLFGKVSNVTDYGCFVEIEPGVEGLVHVSEMDWTNKNVNPAKVVQ 324

Query: 411 KGDEISAVVLAVDAERERISLGIKQMENDPFNAYVSDNKKGALVNGTVTAVDAKGATIEL 470
            GDE   +VL VD ER RISLGIKQ  ++P+ A+ + +KKG  V+G + ++   G  I L
Sbjct: 325 VGDETEVMVLDVDEERRRISLGIKQTRSNPWEAFAAMHKKGDKVSGQIKSITDFGVFIGL 384

Query: 471 EDGVEGYIRASEVSRDRI-EDASLILNVGDKVEAKFTGVDRKNRVINLSIKAKDEAEEQE 529
           + G++G +  S++S     ED       GD++EA    VD +   I+L I+  ++    +
Sbjct: 385 DGGIDGLVHLSDISWQMSGEDLVRNFKKGDEIEAVVLAVDPERERISLGIQQMEQDPFGQ 444

Query: 530 VMA 532
            MA
Sbjct: 445 FMA 447