Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

 Score = 61.6 bits (148), Expect = 1e-13
 Identities = 30/79 (37%), Positives = 53/79 (67%), Gaps = 2/79 (2%)

Query: 189 LQEGTEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLK 247
           L+ G  ++G+V N+ ++GAFVD+G   DGL+HI+ +  + +  P E+V  GD + VKV++
Sbjct: 648 LEVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVME 707

Query: 248 FDRDRTRVSLGLKQLGEDP 266
            D  R R++L ++ L ++P
Sbjct: 708 VDVQRKRIALSMR-LNDEP 725



 Score = 53.9 bits (128), Expect = 2e-11
 Identities = 29/72 (40%), Positives = 49/72 (68%), Gaps = 3/72 (4%)

Query: 277 GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIH-PSKVVNVGDEVEVMVLDI 335
           G  L G V+N+ ++G FV+I    +GLVH+S +  T++ I  P +VV  GD V+V V+++
Sbjct: 651 GMVLEGVVSNVANFGAFVDIGVHQDGLVHISAL--TDRFISDPREVVKAGDIVKVKVMEV 708

Query: 336 DEERRRISLGLK 347
           D +R+RI+L ++
Sbjct: 709 DVQRKRIALSMR 720



 Score = 42.0 bits (97), Expect = 9e-08
 Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 14/123 (11%)

Query: 445 VSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAK 504
           VSD + G ++ G V+ V   GA +++    +G +  S ++   I D   ++  GD V+ K
Sbjct: 645 VSDLEVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVK 704

Query: 505 FTGVDRKNRVINLSIKAKDEAEE-------------QEVMATLNKQDEA-AFGNAMADAF 550
              VD + + I LS++  DE  +             QE  A    + +  A G AM  AF
Sbjct: 705 VMEVDVQRKRIALSMRLNDEPGQDNRSQRSAAPRSGQERRAPRRDEPQGNALGGAMGGAF 764

Query: 551 KAA 553
            AA
Sbjct: 765 AAA 767



 Score = 39.3 bits (90), Expect = 6e-07
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 364 GDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVD 423
           G  + G + ++ +FG F+ +    DGLVH+S ++     +      K GD +   V+ VD
Sbjct: 651 GMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPR-EVVKAGDIVKVKVMEVD 709

Query: 424 AERERISLGIK 434
            +R+RI+L ++
Sbjct: 710 VQRKRIALSMR 720